RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 NT5C3AQ9H0P0 336 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 PTPRTO14522 1441 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 A0A0D9SFI3 127 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 MYL1P05976 194 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 SATB1Q01826 763 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 DEUP1Q05D60 604 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 TTLL7Q6ZT98 887 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 PDCD7Q8N8D1 485 aaKnown RBP9.76□□□□□ -0.85
VCL-206ENST00000623461 NSUN7Q8NE18 718 aaKnown RBP9.76□□□□□ -0.85
VCL-206ENST00000623461 TUBGCP2Q9BSJ2 902 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 KDM3AQ9Y4C1 1321 aa9.76□□□□□ -0.85
VCL-206ENST00000623461 CFAP65Q6ZU64 1925 aaKnown RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 RASSF7Q02833 373 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 ZNF827Q17R98 1081 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 HERC4Q5GLZ8 1057 aaPredicted RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 SCYL3Q8IZE3 742 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 SNX29Q8TEQ0 813 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 FOXP1Q9H334 677 aaPredicted RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 EDC4Q6P2E9 1401 aaKnown RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 MEFVO15553 781 aaPredicted RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 MFAP3LO75121 409 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 GCFC2P16383 781 aaKnown RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 ZBED6P86452 979 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 PSMD6Q15008 389 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 PDCD2Q16342 344 aaPredicted RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 NLRP14Q86W24 1093 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 TEX9Q8N6V9 391 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 EXOC7Q9UPT5 735 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 GOLGA8QA0A0J9YX86 632 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 GOLGA8OA6NCC3 632 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 GOLGA8NF8WBI6 632 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 STK10O94804 968 aaKnown RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 TXKP42681 527 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 LMNB2Q03252 620 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 CLIC6Q96NY7 704 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 STOML1Q9UBI4 398 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 CCDC92Q53HC0 331 aaPredicted RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 CCT6BQ92526 530 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 GFM2Q969S9 779 aaKnown RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 SCINQ9Y6U3 715 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 MAST1Q9Y2H9 1570 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 ANKRD65E5RJM6 399 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 CORO7P57737 925 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 ZNF658Q5TYW1 1059 aaPredicted RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 CCDC89Q8N998 374 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 NEK9Q8TD19 979 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 OLFM3Q96PB7 478 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 CCDC68Q9H2F9 335 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 ZPR1O75312 459 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 CHGBP05060 677 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 STAMQ92783 540 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 THAP9Q9H5L6 903 aa9.75□□□□□ -0.85
VCL-206ENST00000623461 ZCCHC17Q9NP64 241 aaKnown RBP9.75□□□□□ -0.85
VCL-206ENST00000623461 ZBTB22O15209 634 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 DHX9Q08211 1270 aaKnown RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 KLHDC4Q8TBB5 520 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 MGEA5O60502 916 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 XRCC5P13010 732 aaKnown RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 ARID5BQ14865 1188 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 CALCRLQ16602 461 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 PRR16Q569H4 304 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 CNOT6LQ96LI5 555 aaKnown RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 NHEJ1Q9H9Q4 299 aaPredicted RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 NAA30Q147X3 362 aaPredicted RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 ADCK5Q3MIX3 580 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 CCDC93Q567U6 631 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 GALNT17Q6IS24 598 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 TMTC3Q6ZXV5 915 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 APLFQ8IW19 511 aaPredicted RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 SUCLG2Q96I99 432 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 PSMD1Q99460 953 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 MCM9Q9NXL9 1143 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 PLAAQ9Y263 795 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 FOXO3O43524 673 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 PDE6CP51160 858 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 MIGA1Q8NAN2 632 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 VTI1AQ96AJ9 217 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 XAGE2Q96GT9 111 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 METTL14Q9HCE5 456 aaKnown RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 ATP8A1Q9Y2Q0 1164 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 SYCP2Q9BX26 1530 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 LMNB1P20700 586 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 USP14P54578 494 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 SNX16P57768 344 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 POLR2FP61218 127 aaKnown RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 TIMM10P62072 90 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 DYMQ7RTS9 669 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 HAUS7Q99871 368 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 MIS12Q9H081 205 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 KCNF1Q9H3M0 494 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 CCDC188H7C350 402 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 ARL1P40616 181 aaPredicted RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 RWDD2BP57060 319 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 SLC4A8Q2Y0W8 1093 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 CCDC144BQ3MJ40 725 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 OGFOD1Q8N543 542 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 PLBD2Q8NHP8 589 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 DNM3Q9UQ16 869 aa9.74□□□□□ -0.85
VCL-206ENST00000623461 DIS3Q9Y2L1 958 aaKnown RBP9.74□□□□□ -0.85
VCL-206ENST00000623461 PCDHA13Q9Y5I0 950 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms