RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 FKBP15Q5T1M5 1219 aa8.77□□□□□ -1.01
VPS11-209ENST00000622309 FAM114A1Q8IWE2 563 aa8.77□□□□□ -1.01
VPS11-209ENST00000622309 TSEN2Q8NCE0 465 aaKnown RBP8.77□□□□□ -1.01
VPS11-209ENST00000622309 AGAP11Q8TF27 550 aa8.77□□□□□ -1.01
VPS11-209ENST00000622309 AIDAQ96BJ3 306 aa8.77□□□□□ -1.01
VPS11-209ENST00000622309 RBM17Q96I25 401 aaKnown RBP8.77□□□□□ -1.01
VPS11-209ENST00000622309 SLF1Q9BQI6 1058 aa8.77□□□□□ -1.01
VPS11-209ENST00000622309 HMG20BQ9P0W2 317 aa8.77□□□□□ -1.01
VPS11-209ENST00000622309 WWC3Q9ULE0 1092 aa8.77□□□□□ -1.01
VPS11-209ENST00000622309 ITSN1Q15811 1721 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 DPPA5A6NC42 116 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 N4BP3O15049 544 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 POLR3DP05423 398 aaPredicted RBP8.76□□□□□ -1.01
VPS11-209ENST00000622309 ALDH3A1P30838 453 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 NUGGCQ68CJ6 796 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 TRIM68Q6AZZ1 485 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 TBC1D1Q86TI0 1168 aaPredicted RBP8.76□□□□□ -1.01
VPS11-209ENST00000622309 APLFQ8IW19 511 aaPredicted RBP8.76□□□□□ -1.01
VPS11-209ENST00000622309 LMNTD2Q8IXW0 634 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 HS6ST3Q8IZP7 471 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 CNKSR1Q969H4 720 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 CCDC51Q96ER9 411 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 NEK1Q96PY6 1258 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 LEMD3Q9Y2U8 911 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 NEDD4P46934 1319 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 EVI5O60447 810 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 MFAP3LO75121 409 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 ATP1A1P05023 1023 aaKnown RBP8.76□□□□□ -1.01
VPS11-209ENST00000622309 XBP1P17861 261 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 NR1I3Q14994 352 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 GLE1Q53GS7 698 aaKnown RBP8.76□□□□□ -1.01
VPS11-209ENST00000622309 ARMC9Q7Z3E5 817 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 MAATS1Q7Z4T9 603 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 CCDC43Q96MW1 224 aaKnown RBP8.76□□□□□ -1.01
VPS11-209ENST00000622309 TUBGCP6Q96RT7 1819 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 CCND1P24385 295 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 CASP14P31944 242 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 SLC7A5Q01650 507 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 CYP26C1Q6V0L0 522 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 NSUN7Q8NE18 718 aaKnown RBP8.76□□□□□ -1.01
VPS11-209ENST00000622309 L3MBTL3Q96JM7 780 aaPredicted RBP8.76□□□□□ -1.01
VPS11-209ENST00000622309 FAM227BQ96M60 508 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 IRF2BPLQ9H1B7 796 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 JADE2Q9NQC1 790 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 AATFQ9NY61 560 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS11-209ENST00000622309 PHF8Q9UPP1 1060 aa8.76□□□□□ -1.01
VPS11-209ENST00000622309 RGPD8O14715 1765 aaPredicted RBP8.76□□□□□ -1.01
VPS11-209ENST00000622309 GOLGA6L10A0A0M3HER8 536 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 HMGB1P1B2RPK0 211 aaPredicted RBP8.75□□□□□ -1.01
VPS11-209ENST00000622309 M0R2C6 588 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 VAV2P52735 878 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 PPARDQ03181 441 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 NMIQ13287 307 aaPredicted RBP8.75□□□□□ -1.01
VPS11-209ENST00000622309 TRMT44Q8IYL2 757 aaKnown RBP8.75□□□□□ -1.01
VPS11-209ENST00000622309 ATP6V1G3Q96LB4 118 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 ITM2BQ9Y287 266 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 LRP5O75197 1615 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 OVOS2A0A0J9YW53 1432 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 OVOS2Q6IE36 1432 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 DYTNA2CJ06 578 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 CFAP73A6NFT4 308 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 PSMD14O00487 310 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 MATR3P43243 847 aaKnown RBP eCLIP8.75□□□□□ -1.01
VPS11-209ENST00000622309 ODF2Q5BJF6 829 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 CLASRPQ8N2M8 674 aaKnown RBP8.75□□□□□ -1.01
VPS11-209ENST00000622309 TRIM11Q96F44 468 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 LZTS2Q9BRK4 669 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 FAM117AQ9C073 453 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 INCENPQ9NQS7 918 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 MAP3K20Q9NYL2 800 aaKnown RBP8.75□□□□□ -1.01
VPS11-209ENST00000622309 WDR35Q9P2L0 1181 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 SOS2Q07890 1332 aaPredicted RBP8.75□□□□□ -1.01
VPS11-209ENST00000622309 TEX33O43247 280 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 MARCKSP29966 332 aaPredicted RBP8.75□□□□□ -1.01
VPS11-209ENST00000622309 PCK1P35558 622 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 PDE4BQ07343 736 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 ANKRD20A2Q5SQ80 823 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 ANKRD20A1Q5TYW2 823 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 ANKRD20A3Q5VUR7 823 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 CCDC102BQ68D86 513 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 PPP1R42Q7Z4L9 355 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 ANKS4BQ8N8V4 417 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 RUBCNQ92622 972 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 NAF1Q96HR8 494 aaKnown RBP8.75□□□□□ -1.01
VPS11-209ENST00000622309 LRRC2Q9BYS8 371 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 PHACTR1Q9C0D0 580 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 HAUS4Q9H6D7 363 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 ECHDC1Q9NTX5 307 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 PANK4Q9NVE7 773 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 POLR3EQ9NVU0 708 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.75□□□□□ -1.01
VPS11-209ENST00000622309 CEP131Q9UPN4 1083 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 PCDHA5Q9Y5H7 936 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 MON2Q7Z3U7 1717 aa8.75□□□□□ -1.01
VPS11-209ENST00000622309 UBN2Q6ZU65 1347 aa8.74□□□□□ -1.01
VPS11-209ENST00000622309 C1orf167Q5SNV9 1468 aa8.74□□□□□ -1.01
VPS11-209ENST00000622309 DESP17661 470 aa8.74□□□□□ -1.01
VPS11-209ENST00000622309 MRPS35P82673 323 aaKnown RBP8.74□□□□□ -1.01
VPS11-209ENST00000622309 PAK2Q13177 524 aa8.74□□□□□ -1.01
VPS11-209ENST00000622309 CCDC122Q5T0U0 273 aa8.74□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms