RNA–Protein interactions for RNA: ENST00000621245.4

CPNE3-210, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 581 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-210ENST00000621245 MYADML2A6NDP7 307 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 ERC2O15083 957 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 SNAI1O95863 264 aaPredicted RBP13.62□□□□□ -0.23
CPNE3-210ENST00000621245 TFAP4Q01664 338 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 SNX17Q15036 470 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 E2F4Q16254 413 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 LRIT3Q3SXY7 679 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 SLFN13Q68D06 897 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 ZNF444Q8N0Y2 327 aaPredicted RBP13.62□□□□□ -0.23
CPNE3-210ENST00000621245 YTHDC1Q96MU7 727 aaKnown RBP13.62□□□□□ -0.23
CPNE3-210ENST00000621245 NAPBQ9H115 298 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 SLC38A10Q9HBR0 1119 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 PDLIM7Q9NR12 457 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 IL17RBQ9NRM6 502 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 CHD7Q9P2D1 2997 aa13.62□□□□□ -0.23
CPNE3-210ENST00000621245 KBTBD13C9JR72 458 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 TTLL1O95922 423 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 TSPY3P0CV98 308 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 TSPY8P0CW00 308 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 PTGS1P23219 599 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 ITGB8P26012 769 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 ZNF589Q86UQ0 364 aaPredicted RBP13.61□□□□□ -0.23
CPNE3-210ENST00000621245 ARRDC4Q8NCT1 418 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 GMCL1P1Q8NEA9 526 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 XPNPEP3Q9NQH7 507 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 PRDM5Q9NQX1 630 aaPredicted RBP13.61□□□□□ -0.23
CPNE3-210ENST00000621245 HOMER2Q9NSB8 354 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 SLC5A4Q9NY91 659 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 ASTN1O14525 1302 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 ZNF536O15090 1300 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 SYNRGQ9UMZ2 1314 aa13.61□□□□□ -0.23
CPNE3-210ENST00000621245 TRIM43BA6NCK2 446 aa13.6□□□□□ -0.23
CPNE3-210ENST00000621245 TULP1O00294 542 aaPredicted RBP13.6□□□□□ -0.23
CPNE3-210ENST00000621245 ADAMTS4O75173 837 aa13.6□□□□□ -0.23
CPNE3-210ENST00000621245 BMP3P12645 472 aa13.6□□□□□ -0.23
CPNE3-210ENST00000621245 PDE1AP54750 535 aa13.6□□□□□ -0.23
CPNE3-210ENST00000621245 C9orf50Q5SZB4 431 aa13.6□□□□□ -0.23
CPNE3-210ENST00000621245 KCTD1Q719H9 257 aa13.6□□□□□ -0.23
CPNE3-210ENST00000621245 PRPF38AQ8NAV1 312 aaKnown RBP13.6□□□□□ -0.23
CPNE3-210ENST00000621245 TRIM43Q96BQ3 446 aaPredicted RBP13.6□□□□□ -0.23
CPNE3-210ENST00000621245 PHF24Q9UPV7 400 aa13.6□□□□□ -0.23
CPNE3-210ENST00000621245 DIS3Q9Y2L1 958 aaKnown RBP13.6□□□□□ -0.23
CPNE3-210ENST00000621245 CUL9Q8IWT3 2517 aa13.6□□□□□ -0.23
CPNE3-210ENST00000621245 GBF1Q92538 1859 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 MYH6P13533 1939 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 A0A1W2PQ45 241 aaPredicted RBP13.59□□□□□ -0.23
CPNE3-210ENST00000621245 A0A1W2PQY0 241 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 TMEM232C9JQI7 657 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 ATP2A1O14983 1001 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 RARBP10826 455 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 MCCP23508 829 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 CNTN2Q02246 1040 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 HDAC1Q13547 482 aaPredicted RBP13.59□□□□□ -0.23
CPNE3-210ENST00000621245 TMEM132AQ24JP5 1023 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 PIP4P2Q8N4L2 257 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 DEFB123Q8N688 67 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 AGBL1Q96MI9 1066 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 NACAP1Q9BZK3 213 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 LNPKQ9C0E8 428 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 KATNBL1Q9H079 304 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 FEM1BQ9UK73 627 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 ZHX1Q9UKY1 873 aaPredicted RBP13.59□□□□□ -0.23
CPNE3-210ENST00000621245 ISY1Q9ULR0 285 aaKnown RBP13.59□□□□□ -0.23
CPNE3-210ENST00000621245 MTMR7Q9Y216 660 aa13.59□□□□□ -0.23
CPNE3-210ENST00000621245 ZBED4O75132 1171 aa13.58□□□□□ -0.24
CPNE3-210ENST00000621245 COPB2P35606 906 aa13.58□□□□□ -0.24
CPNE3-210ENST00000621245 EPHB4P54760 987 aa13.58□□□□□ -0.24
CPNE3-210ENST00000621245 TLE2Q04725 743 aa13.58□□□□□ -0.24
CPNE3-210ENST00000621245 PDE4BQ07343 736 aa13.58□□□□□ -0.24
CPNE3-210ENST00000621245 NMIQ13287 307 aaPredicted RBP13.58□□□□□ -0.24
CPNE3-210ENST00000621245 BADQ92934 168 aa13.58□□□□□ -0.24
CPNE3-210ENST00000621245 PURBQ96QR8 312 aaKnown RBP13.58□□□□□ -0.24
CPNE3-210ENST00000621245 NRBP1Q9UHY1 535 aa13.58□□□□□ -0.24
CPNE3-210ENST00000621245 STX8Q9UNK0 236 aa13.58□□□□□ -0.24
CPNE3-210ENST00000621245 SYNGAP1Q96PV0 1343 aa13.58□□□□□ -0.24
CPNE3-210ENST00000621245 SOWAHBA6NEL2 793 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 AKR1A1P14550 325 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 SHHQ15465 462 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 LRRFIP1Q32MZ4 808 aaKnown RBP13.57□□□□□ -0.24
CPNE3-210ENST00000621245 MUM1L1Q5H9M0 696 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 TMEM63BQ5T3F8 832 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 CCSAPQ6IQ19 270 aaPredicted RBP13.57□□□□□ -0.24
CPNE3-210ENST00000621245 TTBK2Q6IQ55 1244 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 B4GALNT3Q6L9W6 998 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 CCDC174Q6PII3 467 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 MAMDC4Q6UXC1 1216 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 KLHDC9Q8NEP7 349 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 EVI5LQ96CN4 794 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 DDX11Q96FC9 970 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 GMCL1Q96IK5 515 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 LBHD1Q9BQE6 289 aaPredicted RBP13.57□□□□□ -0.24
CPNE3-210ENST00000621245 ZNF287Q9HBT7 754 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 MTMR10Q9NXD2 777 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.57□□□□□ -0.24
CPNE3-210ENST00000621245 ANAPC4Q9UJX5 808 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 SYNPO2Q9UMS6 1093 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 MUC3AQ02505 3323 aa13.57□□□□□ -0.24
CPNE3-210ENST00000621245 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.56□□□□□ -0.24
CPNE3-210ENST00000621245 TSPY2A6NKD2 308 aa13.56□□□□□ -0.24
CPNE3-210ENST00000621245 CTAGE5O15320 804 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 114.5 ms