RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 HECW2Q9P2P5 1572 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 PRAMEF22A3QJZ6 481 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 SPDYE16A6NNV3 312 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-219ENST00000620786 HSPA1LP34931 641 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 CUL4BQ13620 913 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 SPDYE2Q495Y8 402 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 GPATCH4Q5T3I0 446 aaKnown RBP12.54□□□□□ -0.4
CLIP1-219ENST00000620786 IVLP07476 585 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 TYW1BQ6NUM6 668 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 TAOK1Q7L7X3 1001 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.54□□□□□ -0.4
CLIP1-219ENST00000620786 PIGBQ92521 554 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 RABGAP1Q9Y3P9 1069 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 MAGI2Q86UL8 1455 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 CYP4A11Q02928 519 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 CCDC121Q6ZUS5 278 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 DAAM2Q86T65 1068 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 NUB1Q9Y5A7 615 aa12.54□□□□□ -0.4
CLIP1-219ENST00000620786 M0R2C6 588 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 RNASELQ05823 741 aaKnown RBP12.53□□□□□ -0.4
CLIP1-219ENST00000620786 FAM184BQ9ULE4 1060 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 COL4A3BPQ9Y5P4 624 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 AATKQ6ZMQ8 1374 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 ERVV-1B6SEH8 477 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 SLC16A2P36021 539 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 NUCKS1Q9H1E3 243 aaKnown RBP12.53□□□□□ -0.4
CLIP1-219ENST00000620786 RAB20Q9NX57 234 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 ZWINTO95229 277 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 PDE6CP51160 858 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 STAT2P52630 851 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 CCDC84Q86UT8 332 aaPredicted RBP12.53□□□□□ -0.4
CLIP1-219ENST00000620786 C2orf69Q8N8R5 385 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 CCDC110Q8TBZ0 833 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 ATP6V0A1Q93050 837 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 SEPT10Q9P0V9 454 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 VPS18Q9P253 973 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 ZSCAN20P17040 1043 aaPredicted RBP12.53□□□□□ -0.4
CLIP1-219ENST00000620786 MYSM1Q5VVJ2 828 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 PEX26Q7Z412 305 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 NLRP10Q86W26 655 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 CCDC105Q8IYK2 499 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 POMGNT1Q8WZA1 660 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 GPR101Q96P66 508 aaPredicted RBP12.53□□□□□ -0.4
CLIP1-219ENST00000620786 TM6SF1Q9BZW5 370 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 KANSL2Q9H9L4 492 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 RSPH14Q9UHP6 348 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 ZKSCAN5Q9Y2L8 839 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 XPOTO43592 962 aaKnown RBP12.53□□□□□ -0.4
CLIP1-219ENST00000620786 ADD1P35611 737 aaKnown RBP12.53□□□□□ -0.4
CLIP1-219ENST00000620786 KLHL7Q8IXQ5 586 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 RSAD2Q8WXG1 361 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 DHX36Q9H2U1 1008 aaKnown RBP12.53□□□□□ -0.4
CLIP1-219ENST00000620786 CBX8Q9HC52 389 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 IGSF1Q8N6C5 1336 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 HEG1Q9ULI3 1381 aa12.53□□□□□ -0.4
CLIP1-219ENST00000620786 SYNJ2BP-COX16A0A087WUM0 186 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 RIOK3O14730 519 aaKnown RBP12.52□□□□□ -0.4
CLIP1-219ENST00000620786 FMNL1O95466 1100 aaPredicted RBP12.52□□□□□ -0.4
CLIP1-219ENST00000620786 SLC12A2P55011 1212 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 BRINP3Q76B58 766 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 METTL23Q86XA0 190 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 ARFGAP2Q8N6H7 521 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 MAIP1Q8WWC4 291 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 COX16Q9P0S2 106 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 ERVK-7P63135 1459 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 BMP3P12645 472 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 PPP2R5AQ15172 486 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 FYB2Q5VWT5 728 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 TMTC1Q8IUR5 882 aa12.52□□□□□ -0.4
CLIP1-219ENST00000620786 PFKFB2O60825 505 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 STAT1P42224 750 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 SYDE2Q5VT97 1194 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 NLRP7Q8WX94 980 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 LARSQ9P2J5 1176 aaKnown RBP12.52□□□□□ -0.41
CLIP1-219ENST00000620786 ERBB3P21860 1342 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 HADHQ16836 314 aaKnown RBP12.52□□□□□ -0.41
CLIP1-219ENST00000620786 EEPD1Q7L9B9 569 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 CCDC127Q96BQ5 260 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 JPH2Q9BR39 696 aaPredicted RBP12.52□□□□□ -0.41
CLIP1-219ENST00000620786 PFKFB1P16118 471 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 LACTBP83111 547 aaPredicted RBP12.52□□□□□ -0.41
CLIP1-219ENST00000620786 MORC3Q14149 939 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 RPS6KA1Q15418 735 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 ERCC6LQ2NKX8 1250 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 COPRSQ9NQ92 184 aa12.52□□□□□ -0.41
CLIP1-219ENST00000620786 ZCCHC11Q5TAX3 1644 aaKnown RBP12.51□□□□□ -0.41
CLIP1-219ENST00000620786 KCNJ18B7U540 433 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 KCNJ12Q14500 433 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 GBP6Q6ZN66 633 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 GPR108Q9NPR9 543 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 CDC42BPGQ6DT37 1551 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 ABCB4P21439 1286 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 MAN1A1P33908 653 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 ANKRD36BP1Q96IX9 119 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 PI4KBQ9UBF8 816 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 ZNF215Q9UL58 517 aaPredicted RBP12.51□□□□□ -0.41
CLIP1-219ENST00000620786 XRCC6P12956 609 aaKnown RBP eCLIP12.51□□□□□ -0.41
CLIP1-219ENST00000620786 INTS8Q75QN2 995 aaKnown RBP12.51□□□□□ -0.41
CLIP1-219ENST00000620786 PSMB7Q99436 277 aa12.51□□□□□ -0.41
CLIP1-219ENST00000620786 ZNF277Q9NRM2 450 aaPredicted RBP12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms