RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 CPA4Q9UI42 421 aa22.92■■□□□ 1.26
UPF3A-211ENST00000618700 ZNF214Q9UL59 606 aaPredicted RBP22.92■■□□□ 1.26
UPF3A-211ENST00000618700 LIMCH1Q9UPQ0 1083 aa22.92■■□□□ 1.26
UPF3A-211ENST00000618700 CCDC196A0A1B0GTZ2 297 aa22.91■■□□□ 1.26
UPF3A-211ENST00000618700 PFKFB2O60825 505 aa22.91■■□□□ 1.26
UPF3A-211ENST00000618700 ADD1P35611 737 aaKnown RBP22.91■■□□□ 1.26
UPF3A-211ENST00000618700 FUT2Q10981 343 aa22.91■■□□□ 1.26
UPF3A-211ENST00000618700 TMEM132BQ14DG7 1078 aa22.91■■□□□ 1.26
UPF3A-211ENST00000618700 ME3Q16798 604 aa22.91■■□□□ 1.26
UPF3A-211ENST00000618700 ANKRD13CQ8N6S4 541 aa22.91■■□□□ 1.26
UPF3A-211ENST00000618700 MTMR8Q96EF0 704 aa22.91■■□□□ 1.26
UPF3A-211ENST00000618700 NCOA5Q9HCD5 579 aaKnown RBP22.91■■□□□ 1.26
UPF3A-211ENST00000618700 ATP2A1O14983 1001 aa22.9■■□□□ 1.26
UPF3A-211ENST00000618700 PEX10O60683 326 aa22.9■■□□□ 1.26
UPF3A-211ENST00000618700 CCT2P78371 535 aaKnown RBP22.9■■□□□ 1.26
UPF3A-211ENST00000618700 SCRN1Q12765 414 aa22.9■■□□□ 1.26
UPF3A-211ENST00000618700 STK3Q13188 491 aa22.9■■□□□ 1.26
UPF3A-211ENST00000618700 NOM1Q5C9Z4 860 aaKnown RBP22.9■■□□□ 1.26
UPF3A-211ENST00000618700 PAGR1Q9BTK6 254 aa22.9■■□□□ 1.26
UPF3A-211ENST00000618700 JMJD4Q9H9V9 463 aa22.9■■□□□ 1.26
UPF3A-211ENST00000618700 ZNF536O15090 1300 aa22.89■■□□□ 1.26
UPF3A-211ENST00000618700 CNTNAP5Q8WYK1 1306 aa22.89■■□□□ 1.26
UPF3A-211ENST00000618700 HAX1O00165 279 aa22.89■■□□□ 1.25
UPF3A-211ENST00000618700 ZBED4O75132 1171 aa22.89■■□□□ 1.25
UPF3A-211ENST00000618700 MCM2P49736 904 aa22.89■■□□□ 1.25
UPF3A-211ENST00000618700 OAZ1P54368 228 aa22.89■■□□□ 1.25
UPF3A-211ENST00000618700 ERVK-9P63128 1117 aa22.89■■□□□ 1.25
UPF3A-211ENST00000618700 ERVK-24P63145 666 aa22.89■■□□□ 1.25
UPF3A-211ENST00000618700 NTRK3Q16288 839 aa22.89■■□□□ 1.25
UPF3A-211ENST00000618700 CMTR1Q8N1G2 835 aaKnown RBP22.89■■□□□ 1.25
UPF3A-211ENST00000618700 SLKQ9H2G2 1235 aaPredicted RBP22.89■■□□□ 1.25
UPF3A-211ENST00000618700 PRDM10Q9NQV6 1147 aa22.89■■□□□ 1.25
UPF3A-211ENST00000618700 LBX1P52954 281 aa22.88■■□□□ 1.25
UPF3A-211ENST00000618700 SNAP25P60880 206 aa22.88■■□□□ 1.25
UPF3A-211ENST00000618700 ST3GAL1Q11201 340 aa22.88■■□□□ 1.25
UPF3A-211ENST00000618700 CDC37Q16543 378 aaPredicted RBP22.88■■□□□ 1.25
UPF3A-211ENST00000618700 GPRC5AQ8NFJ5 357 aa22.88■■□□□ 1.25
UPF3A-211ENST00000618700 GTF3C6Q969F1 213 aa22.88■■□□□ 1.25
UPF3A-211ENST00000618700 ZSCAN31Q96LW9 406 aaPredicted RBP22.88■■□□□ 1.25
UPF3A-211ENST00000618700 SPATC1LQ9H0A9 340 aa22.88■■□□□ 1.25
UPF3A-211ENST00000618700 IFNAR1P17181 557 aa22.87■■□□□ 1.25
UPF3A-211ENST00000618700 Q3C1V9 767 aa22.87■■□□□ 1.25
UPF3A-211ENST00000618700 COL13A1Q5TAT6 717 aaPredicted RBP22.87■■□□□ 1.25
UPF3A-211ENST00000618700 TEX13BQ9BXU2 312 aa22.87■■□□□ 1.25
UPF3A-211ENST00000618700 SH2B1Q9NRF2 756 aaPredicted RBP22.87■■□□□ 1.25
UPF3A-211ENST00000618700 BAZ2BQ9UIF8 2168 aaKnown RBP22.87■■□□□ 1.25
UPF3A-211ENST00000618700 GPR25O00155 361 aa22.86■■□□□ 1.25
UPF3A-211ENST00000618700 ZBTB5O15062 677 aa22.86■■□□□ 1.25
UPF3A-211ENST00000618700 DHX16O60231 1041 aaKnown RBP22.86■■□□□ 1.25
UPF3A-211ENST00000618700 ICAM1P05362 532 aa22.86■■□□□ 1.25
UPF3A-211ENST00000618700 QRICH1Q2TAL8 776 aa22.86■■□□□ 1.25
UPF3A-211ENST00000618700 CCDC174Q6PII3 467 aa22.86■■□□□ 1.25
UPF3A-211ENST00000618700 NECAB1Q8N987 351 aa22.86■■□□□ 1.25
UPF3A-211ENST00000618700 PIGSQ96S52 555 aa22.86■■□□□ 1.25
UPF3A-211ENST00000618700 MOV10L1Q9BXT6 1211 aaKnown RBP22.86■■□□□ 1.25
UPF3A-211ENST00000618700 RAVER2Q9HCJ3 691 aaKnown RBP22.86■■□□□ 1.25
UPF3A-211ENST00000618700 VAT1LQ9HCJ6 419 aa22.86■■□□□ 1.25
UPF3A-211ENST00000618700 TSKSQ9UJT2 592 aa22.86■■□□□ 1.25
UPF3A-211ENST00000618700 STAT3P40763 770 aa22.85■■□□□ 1.25
UPF3A-211ENST00000618700 CCDC82Q8N4S0 544 aa22.85■■□□□ 1.25
UPF3A-211ENST00000618700 CTDP1Q9Y5B0 961 aaPredicted RBP22.85■■□□□ 1.25
UPF3A-211ENST00000618700 PNMA6FA0A0J9YX94 578 aa22.84■■□□□ 1.25
UPF3A-211ENST00000618700 PPP1R11O60927 126 aaPredicted RBP22.84■■□□□ 1.25
UPF3A-211ENST00000618700 SNRNP48Q6IEG0 339 aaKnown RBP22.84■■□□□ 1.25
UPF3A-211ENST00000618700 HOMER1Q86YM7 354 aa22.84■■□□□ 1.25
UPF3A-211ENST00000618700 RIOX2Q8IUF8 465 aa22.84■■□□□ 1.25
UPF3A-211ENST00000618700 CPXCR1Q8N123 301 aa22.84■■□□□ 1.25
UPF3A-211ENST00000618700 RRP36Q96EU6 259 aaKnown RBP22.84■■□□□ 1.25
UPF3A-211ENST00000618700 TMX3Q96JJ7 454 aa22.84■■□□□ 1.25
UPF3A-211ENST00000618700 AGBL1Q96MI9 1066 aa22.84■■□□□ 1.25
UPF3A-211ENST00000618700 PNMA2Q9UL42 364 aa22.84■■□□□ 1.25
UPF3A-211ENST00000618700 CPLX1O14810 134 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 CCNA1P78396 465 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 SP3Q02447 781 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 PLS1Q14651 629 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 IFFO2Q5TF58 517 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 SHCBP1Q8NEM2 672 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 PHKBQ93100 1093 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 SNX21Q969T3 373 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 PORCNQ9H237 461 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 CCPG1Q9ULG6 757 aa22.83■■□□□ 1.25
UPF3A-211ENST00000618700 MYH6P13533 1939 aa22.82■■□□□ 1.24
UPF3A-211ENST00000618700 CTDNEP1O95476 244 aa22.82■■□□□ 1.24
UPF3A-211ENST00000618700 SLC25A27O95847 323 aa22.82■■□□□ 1.24
UPF3A-211ENST00000618700 TAL1P17542 331 aaPredicted RBP22.82■■□□□ 1.24
UPF3A-211ENST00000618700 COPB2P35606 906 aa22.82■■□□□ 1.24
UPF3A-211ENST00000618700 LACTBP83111 547 aaPredicted RBP22.82■■□□□ 1.24
UPF3A-211ENST00000618700 CPLX2Q6PUV4 134 aaKnown RBP22.82■■□□□ 1.24
UPF3A-211ENST00000618700 ZNF296Q8WUU4 475 aaPredicted RBP22.82■■□□□ 1.24
UPF3A-211ENST00000618700 RNF26Q9BY78 433 aaPredicted RBP22.82■■□□□ 1.24
UPF3A-211ENST00000618700 RIPK3Q9Y572 518 aa22.82■■□□□ 1.24
UPF3A-211ENST00000618700 ZSWIM8A7E2V4 1837 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 hCG_1642624A0A1W2PR95 340 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 PRPF3O43395 683 aaKnown RBP22.81■■□□□ 1.24
UPF3A-211ENST00000618700 FKTNO75072 461 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 CDKL5O76039 1030 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 ERCC3P19447 782 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 TKFCQ3LXA3 575 aa22.81■■□□□ 1.24
UPF3A-211ENST00000618700 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.81■■□□□ 1.24
UPF3A-211ENST00000618700 FBXO11Q86XK2 927 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 158.8 ms