RNA–Protein interactions for RNA: ENST00000617054.1

NEK3-207, Transcript of NIMA related kinase 3, humanhuman

TSL 5

Gene NEK3, Length 3,256 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-207ENST00000617054 KLRC3Q07444 240 aa8.9□□□□□ -0.98
NEK3-207ENST00000617054 CCDC173Q0VFZ6 552 aa8.9□□□□□ -0.98
NEK3-207ENST00000617054 LETM2Q2VYF4 491 aa8.9□□□□□ -0.98
NEK3-207ENST00000617054 SLFN13Q68D06 897 aa8.9□□□□□ -0.98
NEK3-207ENST00000617054 SPC24Q8NBT2 197 aa8.9□□□□□ -0.98
NEK3-207ENST00000617054 CNNM3Q8NE01 707 aa8.9□□□□□ -0.98
NEK3-207ENST00000617054 SYMPKQ92797 1274 aaKnown RBP8.9□□□□□ -0.98
NEK3-207ENST00000617054 SPZ1Q9BXG8 430 aa8.9□□□□□ -0.98
NEK3-207ENST00000617054 TMEM60Q9H2L4 133 aa8.9□□□□□ -0.98
NEK3-207ENST00000617054 KIAA1468Q9P260 1216 aa8.9□□□□□ -0.98
NEK3-207ENST00000617054 SRPRBQ9Y5M8 271 aaKnown RBP8.9□□□□□ -0.98
NEK3-207ENST00000617054 AFMP43652 599 aa8.9□□□□□ -0.99
NEK3-207ENST00000617054 GMPSP49915 693 aaPredicted RBP8.9□□□□□ -0.99
NEK3-207ENST00000617054 METTL16Q86W50 562 aaKnown RBP8.9□□□□□ -0.99
NEK3-207ENST00000617054 FAM200AQ8TCP9 573 aa8.9□□□□□ -0.99
NEK3-207ENST00000617054 DHX58Q96C10 678 aa8.9□□□□□ -0.99
NEK3-207ENST00000617054 RIOX1Q9H6W3 641 aa8.9□□□□□ -0.99
NEK3-207ENST00000617054 KANSL2Q9H9L4 492 aa8.9□□□□□ -0.99
NEK3-207ENST00000617054 RRAGDQ9NQL2 400 aaPredicted RBP8.9□□□□□ -0.99
NEK3-207ENST00000617054 M0R2N6 131 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 CCNT1O60563 726 aaKnown RBP8.89□□□□□ -0.99
NEK3-207ENST00000617054 SNHG28P0DPA3 235 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 USH1GQ495M9 461 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 SPDYE2Q495Y8 402 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 ARHGAP27Q6ZUM4 889 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 MICALL2Q8IY33 904 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 CCDC17Q96LX7 622 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 NOL7Q9UMY1 257 aaKnown RBP8.89□□□□□ -0.99
NEK3-207ENST00000617054 MYH4Q9Y623 1939 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 ENTPD3O75355 529 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 RASA3Q14644 834 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 HSP90AA4PQ58FG1 418 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 SOGA3Q5TF21 947 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 FAM151AQ8WW52 585 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 PPP1R9BQ96SB3 815 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 ZMYND12Q9H0C1 365 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 MYO3BQ8WXR4 1341 aa8.89□□□□□ -0.99
NEK3-207ENST00000617054 PLIN4Q96Q06 1357 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L15C9J2P7 530 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L13C9JLJ4 530 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 TMEM232C9JQI7 657 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L11C9JVI0 530 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L18D6R9N7 530 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L22D6RA61 530 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L17D6RBQ6 530 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L19D6RCP7 530 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L20D6RJB6 530 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 NDUFB10O96000 172 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 CALML3P27482 149 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L24Q0WX57 530 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 USP17L6PQ6QN14 398 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 AGBL3Q8NEM8 1001 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 TBCKQ8TEA7 893 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 CNOT7Q9UIV1 285 aaKnown RBP8.88□□□□□ -0.99
NEK3-207ENST00000617054 SMCHD1A6NHR9 2005 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 ZNF541Q9H0D2 1346 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 GRIPAP1Q4V328 841 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 ASPRV1Q53RT3 343 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 KRBA2Q6ZNG9 492 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 TMEM179Q6ZVK1 233 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 LZTS2Q9BRK4 669 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 CEP131Q9UPN4 1083 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 PCDHA5Q9Y5H7 936 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 MYO1BO43795 1136 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 AOPEPQ8N6M6 819 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 RGS22Q8NE09 1264 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 PDLIM2Q96JY6 352 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 FHDC1Q9C0D6 1143 aaPredicted RBP8.88□□□□□ -0.99
NEK3-207ENST00000617054 SH3GLB2Q9NR46 395 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 FAM13BQ9NYF5 915 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 CD2APQ9Y5K6 639 aa8.88□□□□□ -0.99
NEK3-207ENST00000617054 CTAGE5O15320 804 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 COBLO75128 1261 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 PTMAP06454 111 aaKnown RBP8.87□□□□□ -0.99
NEK3-207ENST00000617054 ATP2C1P98194 919 aaPredicted RBP8.87□□□□□ -0.99
NEK3-207ENST00000617054 PRKG1Q13976 671 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 PTPN21Q16825 1174 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 QRICH1Q2TAL8 776 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 C4orf32Q8N8J7 132 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 CCDC148Q8NFR7 591 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 C6orf50Q9HD87 102 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 PNMA6FA0A0J9YX94 578 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 BMP6P22004 513 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 TNNI2P48788 182 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 IQCB1Q15051 598 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 STX1AQ16623 288 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 DHX40Q8IX18 779 aaKnown RBP8.87□□□□□ -0.99
NEK3-207ENST00000617054 BLZF1Q9H2G9 400 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 NYAP2Q9P242 653 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 ATRNL1Q5VV63 1379 aa8.87□□□□□ -0.99
NEK3-207ENST00000617054 ZBTB5O15062 677 aa8.86□□□□□ -0.99
NEK3-207ENST00000617054 EDIL3O43854 480 aa8.86□□□□□ -0.99
NEK3-207ENST00000617054 MDM2Q00987 491 aaPredicted RBP8.86□□□□□ -0.99
NEK3-207ENST00000617054 TNIP1Q15025 636 aa8.86□□□□□ -0.99
NEK3-207ENST00000617054 KARSQ15046 597 aaKnown RBP8.86□□□□□ -0.99
NEK3-207ENST00000617054 CDC37Q16543 378 aaPredicted RBP8.86□□□□□ -0.99
NEK3-207ENST00000617054 REXO1Q8N1G1 1221 aaKnown RBP8.86□□□□□ -0.99
NEK3-207ENST00000617054 MFRPQ9BY79 579 aa8.86□□□□□ -0.99
NEK3-207ENST00000617054 FBXO28Q9NVF7 368 aa8.86□□□□□ -0.99
NEK3-207ENST00000617054 HACL1Q9UJ83 578 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms