RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 KLRF2D3W0D1 207 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 RPS6KB1P23443 525 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 PTPREP23469 700 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 MAPK4P31152 587 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 GRB14Q14449 540 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 GRM4Q14833 912 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 USH1GQ495M9 461 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 RAET1EQ8TD07 263 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 CHURC1Q8WUH1 139 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 BRF1Q92994 677 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 COA7Q96BR5 231 aa15.76■□□□□ 0.11
LINC00540-202ENST00000616974 ZNF236Q9UL36 1845 aa15.75■□□□□ 0.11
LINC00540-202ENST00000616974 NFIBO00712 420 aa15.75■□□□□ 0.11
LINC00540-202ENST00000616974 ALAS1P13196 640 aa15.75■□□□□ 0.11
LINC00540-202ENST00000616974 TOB2Q14106 344 aaPredicted RBP15.75■□□□□ 0.11
LINC00540-202ENST00000616974 PPP4R3BQ5MIZ7 849 aa15.75■□□□□ 0.11
LINC00540-202ENST00000616974 APOA5Q6Q788 366 aa15.75■□□□□ 0.11
LINC00540-202ENST00000616974 NFXL1Q6ZNB6 911 aa15.75■□□□□ 0.11
LINC00540-202ENST00000616974 FAM160B2Q86V87 743 aa15.75■□□□□ 0.11
LINC00540-202ENST00000616974 CCAR1Q8IX12 1150 aaKnown RBP15.75■□□□□ 0.11
LINC00540-202ENST00000616974 TBC1D5Q92609 795 aa15.75■□□□□ 0.11
LINC00540-202ENST00000616974 ASTN1O14525 1302 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 ADCY3O60266 1144 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 PLA2G6O60733 806 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 ZBED4O75132 1171 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 SART3Q15020 963 aaKnown RBP15.74■□□□□ 0.11
LINC00540-202ENST00000616974 CDC37Q16543 378 aaPredicted RBP15.74■□□□□ 0.11
LINC00540-202ENST00000616974 SLC9C1Q4G0N8 1177 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 BLOC1S2Q6QNY1 142 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 GTF3C2Q8WUA4 911 aaPredicted RBP15.74■□□□□ 0.11
LINC00540-202ENST00000616974 TMEM87BQ96K49 555 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 CDC27P30260 824 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 LIFRP42702 1097 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 SOX10P56693 466 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 QRICH1Q2TAL8 776 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 CCDC178Q5BJE1 867 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 HOMER1Q86YM7 354 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 SRBD1Q8N5C6 995 aaKnown RBP15.74■□□□□ 0.11
LINC00540-202ENST00000616974 FGD4Q96M96 766 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 PIGSQ96S52 555 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 ZSWIM6Q9HCJ5 1215 aa15.74■□□□□ 0.11
LINC00540-202ENST00000616974 FAM217BQ9NTX9 383 aaPredicted RBP15.74■□□□□ 0.11
LINC00540-202ENST00000616974 RBBP6Q7Z6E9 1792 aaKnown RBP15.74■□□□□ 0.11
LINC00540-202ENST00000616974 CCDC85CA6NKD9 419 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 ATP2A1O14983 1001 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 DHX16O60231 1041 aaKnown RBP15.73■□□□□ 0.11
LINC00540-202ENST00000616974 GRK4P32298 578 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 CCNA1P78396 465 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 CNTN2Q02246 1040 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 GPATCH4Q5T3I0 446 aaKnown RBP15.73■□□□□ 0.11
LINC00540-202ENST00000616974 CATIPQ7Z7H3 387 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 SGMS1Q86VZ5 419 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 ZNF333Q96JL9 665 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 KIF2CQ99661 725 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 NUDT12Q9BQG2 462 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 RNF146Q9NTX7 359 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 CCPG1Q9ULG6 757 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 KLF18A0A0U1RQI7 1052 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 CCDC69A6NI79 296 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 CYP2C19P33261 490 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 MAP2K5Q13163 448 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 KRT32Q14532 448 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 ASPRV1Q53RT3 343 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 RUFY3Q7L099 469 aa15.73■□□□□ 0.11
LINC00540-202ENST00000616974 CWC22Q9HCG8 908 aaKnown RBP15.73■□□□□ 0.11
LINC00540-202ENST00000616974 A1CFQ9NQ94 594 aaKnown RBP15.73■□□□□ 0.11
LINC00540-202ENST00000616974 NAP1L2Q9ULW6 460 aaPredicted RBP15.73■□□□□ 0.11
LINC00540-202ENST00000616974 POTEFA5A3E0 1075 aa15.72■□□□□ 0.11
LINC00540-202ENST00000616974 OPLAHO14841 1288 aa15.72■□□□□ 0.11
LINC00540-202ENST00000616974 INHAP05111 366 aa15.72■□□□□ 0.11
LINC00540-202ENST00000616974 ICAM1P05362 532 aa15.72■□□□□ 0.11
LINC00540-202ENST00000616974 NOL8Q76FK4 1167 aaKnown RBP15.72■□□□□ 0.11
LINC00540-202ENST00000616974 SHCBP1Q8NEM2 672 aa15.72■□□□□ 0.11
LINC00540-202ENST00000616974 TRERF1Q96PN7 1200 aa15.72■□□□□ 0.11
LINC00540-202ENST00000616974 NCOA5Q9HCD5 579 aaKnown RBP15.72■□□□□ 0.11
LINC00540-202ENST00000616974 SLC12A7Q9Y666 1083 aa15.72■□□□□ 0.11
LINC00540-202ENST00000616974 FRMPD3Q5JV73 1810 aa15.72■□□□□ 0.11
LINC00540-202ENST00000616974 PTGS1P23219 599 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 ADD1P35611 737 aaKnown RBP15.71■□□□□ 0.11
LINC00540-202ENST00000616974 NT5C2P49902 561 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 PKN2Q16513 984 aaKnown RBP15.71■□□□□ 0.11
LINC00540-202ENST00000616974 PRAMEF19Q5SWL8 479 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 CLEC4DQ8WXI8 215 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 MMP19Q99542 508 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 UNC93B1Q9H1C4 597 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 IVNS1ABPQ9Y6Y0 642 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 GNRH1P01148 92 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 SLC30A10Q6XR72 485 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 AGXT2Q9BYV1 514 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 MROH8Q9H579 483 aa15.71■□□□□ 0.11
LINC00540-202ENST00000616974 CTDP1Q9Y5B0 961 aaPredicted RBP15.71■□□□□ 0.11
LINC00540-202ENST00000616974 SLC15A5A6NIM6 579 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 FCER1AP12319 257 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 HOXD10P28358 340 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 IRF5Q13568 498 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 FANCBQ8NB91 859 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 TRPV1Q8NER1 839 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 ARMC5Q96C12 935 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 MTMR8Q96EF0 704 aa15.7■□□□□ 0.1
LINC00540-202ENST00000616974 RIOX1Q9H6W3 641 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms