RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 H0YIN7 160 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 MMP1P03956 469 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 EPHA10Q5JZY3 1008 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 LCORLQ8N3X6 602 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 ATG3Q9NT62 314 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 CLEC11AQ9Y240 323 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 SSX2IPQ9Y2D8 614 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 PCDHA1Q9Y5I3 950 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 CDK12Q9NYV4 1490 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 SH2B2O14492 632 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 IFNB1P01574 187 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 VPS41P49754 854 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 EHHADHQ08426 723 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 RBL2Q08999 1139 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 SLFNL1Q499Z3 407 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 CEP128Q6ZU80 1094 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 DDX25Q9UHL0 483 aaKnown RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 SEC31AO94979 1220 aaKnown RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 CHURC1Q8WUH1 139 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 STMN2Q93045 179 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 DPH5Q9H2P9 285 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 FAM184BQ9ULE4 1060 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 NOP56O00567 594 aaKnown RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 NDC80O14777 642 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 RGS16O15492 202 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 PSMC4P43686 418 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 CRKLP46109 303 aaKnown RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 DLGAP5Q15398 846 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 CCDC14Q49A88 953 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 USPL1Q5W0Q7 1092 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 NLRP10Q86W26 655 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 ENOX1Q8TC92 643 aaKnown RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 LARSQ9P2J5 1176 aaKnown RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 FEZ2Q9UHY8 353 aaPredicted RBP15.43■□□□□ 0.06
CPSF1-212ENST00000616140 MAN1B1Q9UKM7 699 aa15.43■□□□□ 0.06
CPSF1-212ENST00000616140 ARID5BQ14865 1188 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 SOS2Q07890 1332 aaPredicted RBP15.42■□□□□ 0.06
CPSF1-212ENST00000616140 IGKV5-2P06315 115 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 HSPA1LP34931 641 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 RASA3Q14644 834 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 MED4Q9NPJ6 270 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 PCDHB6Q9Y5E3 794 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 HHATQ5VTY9 493 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 FYB2Q5VWT5 728 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 CARD10Q9BWT7 1032 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 COL4A3BPQ9Y5P4 624 aa15.42■□□□□ 0.06
CPSF1-212ENST00000616140 PPFIA4O75335 1185 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 EEF1GP26641 437 aaKnown RBP15.41■□□□□ 0.06
CPSF1-212ENST00000616140 LIFRP42702 1097 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 RASSF7Q02833 373 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 MAP7D1Q3KQU3 841 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 NLRX1Q86UT6 975 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 MGARPQ8TDB4 240 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 KIAA1024Q9UPX6 916 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 EFCAB6Q5THR3 1501 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 ZMYND10O75800 440 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 GUCY2DQ02846 1103 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 NAA35Q5VZE5 725 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 MIER3Q7Z3K6 550 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 CCDC127Q96BQ5 260 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 TMOD4Q9NZQ9 345 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 CPSF1Q10570 1443 aaKnown RBP15.41■□□□□ 0.06
CPSF1-212ENST00000616140 CYP2D7A0A087X1C5 515 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 ATP11AP98196 1134 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 ICA1Q05084 483 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 FBXO11Q86XK2 927 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 ANKRD42Q8N9B4 389 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 UHMK1Q8TAS1 419 aaKnown RBP15.41■□□□□ 0.06
CPSF1-212ENST00000616140 LARP4BQ92615 738 aaKnown RBP15.41■□□□□ 0.06
CPSF1-212ENST00000616140 METTL14Q9HCE5 456 aaKnown RBP15.41■□□□□ 0.06
CPSF1-212ENST00000616140 ABCA8O94911 1581 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 A0A1B0GUA9 196 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 ZBED4O75132 1171 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 TOB2Q14106 344 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-212ENST00000616140 CERKLQ49MI3 558 aaPredicted RBP15.41■□□□□ 0.06
CPSF1-212ENST00000616140 SPATA24Q86W54 205 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 EPSTI1Q96J88 318 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 IWS1Q96ST2 819 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 PLEKHG1Q9ULL1 1385 aa15.41■□□□□ 0.06
CPSF1-212ENST00000616140 EXOC3L4Q17RC7 722 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 DOK7Q18PE1 504 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 PPM1KQ8N3J5 372 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 ACRBPQ8NEB7 543 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 MYO5CQ9NQX4 1742 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 KRT19P08727 400 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 ATP2B4P23634 1241 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 POLD1P28340 1107 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 PRKG1Q13976 671 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 NEDD9Q14511 834 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 SLFN13Q68D06 897 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 VSTM4Q8IW00 320 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 BAIAP2L1Q9UHR4 511 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 ZFYVE16Q7Z3T8 1539 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 TMEM94Q12767 1356 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 ZNF131P52739 623 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 SLC8A3P57103 927 aa15.4■□□□□ 0.06
CPSF1-212ENST00000616140 PABPC4Q13310 644 aaKnown RBP eCLIP15.4■□□□□ 0.063e-6■■■□□ 17
CPSF1-212ENST00000616140 TESPA1A2RU30 521 aaPredicted RBP15.39■□□□□ 0.05
CPSF1-212ENST00000616140 PCK1P35558 622 aa15.39■□□□□ 0.05
CPSF1-212ENST00000616140 GRM1Q13255 1194 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms