RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 PRR12Q9ULL5 1215 aa13.56□□□□□ -0.24
LINC00539-204ENST00000608957 ISY1Q9ULR0 285 aaKnown RBP13.56□□□□□ -0.24
LINC00539-204ENST00000608957 FRMPD2Q68DX3 1309 aaPredicted RBP13.56□□□□□ -0.24
LINC00539-204ENST00000608957 B4E1Z4 1266 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 PCP11498 1178 aaKnown RBP13.55□□□□□ -0.24
LINC00539-204ENST00000608957 SLC16A2P36021 539 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 OAZ1P54368 228 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 KCTD2Q14681 263 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 KIAA1211Q6ZU35 1233 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 CHURC1Q8WUH1 139 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 DCAF4Q8WV16 495 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 TINF2Q9BSI4 451 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 LSG1Q9H089 658 aaKnown RBP13.55□□□□□ -0.24
LINC00539-204ENST00000608957 SLC5A4Q9NY91 659 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 DIS3Q9Y2L1 958 aaKnown RBP13.55□□□□□ -0.24
LINC00539-204ENST00000608957 TAF6LQ9Y6J9 622 aa13.55□□□□□ -0.24
LINC00539-204ENST00000608957 TRIOBPQ9H2D6 2365 aa13.54□□□□□ -0.24
LINC00539-204ENST00000608957 BAZ2BQ9UIF8 2168 aaKnown RBP13.54□□□□□ -0.24
LINC00539-204ENST00000608957 KDM4AO75164 1064 aa13.54□□□□□ -0.24
LINC00539-204ENST00000608957 SNHG28P0DPA3 235 aa13.54□□□□□ -0.24
LINC00539-204ENST00000608957 PDHBP11177 359 aa13.54□□□□□ -0.24
LINC00539-204ENST00000608957 IKQ13123 557 aaPredicted RBP13.54□□□□□ -0.24
LINC00539-204ENST00000608957 CCDC96Q2M329 555 aa13.54□□□□□ -0.24
LINC00539-204ENST00000608957 CCDC174Q6PII3 467 aa13.54□□□□□ -0.24
LINC00539-204ENST00000608957 BTNL9Q6UXG8 535 aa13.54□□□□□ -0.24
LINC00539-204ENST00000608957 RNF41Q9H4P4 317 aaPredicted RBP13.54□□□□□ -0.24
LINC00539-204ENST00000608957 HOMER2Q9NSB8 354 aa13.54□□□□□ -0.24
LINC00539-204ENST00000608957 COLQQ9Y215 455 aaPredicted RBP13.54□□□□□ -0.24
LINC00539-204ENST00000608957 CTDP1Q9Y5B0 961 aaPredicted RBP13.54□□□□□ -0.24
LINC00539-204ENST00000608957 LTBP2Q14767 1821 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 SEPT4O43236 478 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 SNAI1O95863 264 aaPredicted RBP13.53□□□□□ -0.24
LINC00539-204ENST00000608957 ZNF865P0CJ78 1059 aaPredicted RBP13.53□□□□□ -0.24
LINC00539-204ENST00000608957 FDX1P10109 184 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 CNTN2Q02246 1040 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 LRRC26Q2I0M4 334 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 MUM1L1Q5H9M0 696 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 HABP4Q5JVS0 413 aaKnown RBP13.53□□□□□ -0.24
LINC00539-204ENST00000608957 SYDE2Q5VT97 1194 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 CHST13Q8NET6 341 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 ESR2Q92731 530 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 LENG1Q96BZ8 264 aaPredicted RBP13.53□□□□□ -0.24
LINC00539-204ENST00000608957 TTC14Q96N46 770 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 RANBP17Q9H2T7 1088 aaKnown RBP13.53□□□□□ -0.24
LINC00539-204ENST00000608957 PRO3102Q9H379 93 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 GPCPD1Q9NPB8 672 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 RNF146Q9NTX7 359 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 ZSWIM5Q9P217 1185 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 ASTN1O14525 1302 aa13.53□□□□□ -0.24
LINC00539-204ENST00000608957 EVI5O60447 810 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 MSCO60682 206 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 ALAS1P13196 640 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 ZNF543Q08ER8 600 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 IMMTQ16891 758 aaKnown RBP13.52□□□□□ -0.25
LINC00539-204ENST00000608957 GJC2Q5T442 439 aaPredicted RBP13.52□□□□□ -0.25
LINC00539-204ENST00000608957 MAMDC4Q6UXC1 1216 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 CHRDL2Q6WN34 429 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 CYB5R4Q7L1T6 521 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 C7orf61Q8IZ16 206 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 ENAHQ8N8S7 591 aaPredicted RBP13.52□□□□□ -0.25
LINC00539-204ENST00000608957 DDX11Q96FC9 970 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 CPVLQ9H3G5 476 aa13.52□□□□□ -0.25
LINC00539-204ENST00000608957 A1CFQ9NQ94 594 aaKnown RBP13.52□□□□□ -0.25
LINC00539-204ENST00000608957 DDX49Q9Y6V7 483 aaKnown RBP13.52□□□□□ -0.25
LINC00539-204ENST00000608957 SYNGAP1Q96PV0 1343 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 SOWAHBA6NEL2 793 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 ADCY6O43306 1168 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 SLC34A2O95436 690 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 CYP21A2P08686 494 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 DGKHQ86XP1 1220 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 ANKRD35Q8N283 1001 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 FAM133AQ8N9E0 248 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 ANKS1AQ92625 1134 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 TRERF1Q96PN7 1200 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 KATNBL1Q9H079 304 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 ACAD9Q9H845 621 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 FBXO40Q9UH90 709 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 NRBP1Q9UHY1 535 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 CTNNA3Q9UI47 895 aa13.51□□□□□ -0.25
LINC00539-204ENST00000608957 ZMYND8Q9ULU4 1186 aaPredicted RBP13.51□□□□□ -0.25
LINC00539-204ENST00000608957 TNKSO95271 1327 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 DNAH12Q6ZR08 3092 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 DNM1LO00429 736 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 ICAM1P05362 532 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 GOLGA8HP0CJ92 632 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 ANAPC15P60006 121 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 IRX5P78411 483 aaPredicted RBP13.5□□□□□ -0.25
LINC00539-204ENST00000608957 LRRC41Q15345 812 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 SEC23AQ15436 765 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 TKFCQ3LXA3 575 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 STOX1Q6ZVD7 989 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 ZNF467Q7Z7K2 595 aaPredicted RBP13.5□□□□□ -0.25
LINC00539-204ENST00000608957 MSL3Q8N5Y2 521 aaKnown RBP13.5□□□□□ -0.25
LINC00539-204ENST00000608957 PNMA1Q8ND90 353 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 PURBQ96QR8 312 aaKnown RBP13.5□□□□□ -0.25
LINC00539-204ENST00000608957 ZSCAN10Q96SZ4 725 aaPredicted RBP13.5□□□□□ -0.25
LINC00539-204ENST00000608957 KIF2CQ99661 725 aa13.5□□□□□ -0.25
LINC00539-204ENST00000608957 SENP6Q9GZR1 1112 aaPredicted RBP13.5□□□□□ -0.25
LINC00539-204ENST00000608957 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.5□□□□□ -0.25
LINC00539-204ENST00000608957 RBM27Q9P2N5 1060 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms