RNA–Protein interactions for RNA: ENST00000600284.5

VRK3-221, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 768 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-221ENST00000600284 ACAD9Q9H845 621 aa18.65■□□□□ 0.58
VRK3-221ENST00000600284 DIAPH3Q9NSV4 1193 aa18.65■□□□□ 0.58
VRK3-221ENST00000600284 FAM184BQ9ULE4 1060 aa18.65■□□□□ 0.58
VRK3-221ENST00000600284 ZNF536O15090 1300 aa18.65■□□□□ 0.58
VRK3-221ENST00000600284 PLXNA1Q9UIW2 1896 aa18.65■□□□□ 0.58
VRK3-221ENST00000600284 SNX17Q15036 470 aa18.64■□□□□ 0.57
VRK3-221ENST00000600284 RRP12Q5JTH9 1297 aaKnown RBP18.64■□□□□ 0.57
VRK3-221ENST00000600284 BTNL9Q6UXG8 535 aa18.64■□□□□ 0.57
VRK3-221ENST00000600284 TMEM47Q9BQJ4 181 aa18.64■□□□□ 0.57
VRK3-221ENST00000600284 PRR12Q9ULL5 1215 aa18.64■□□□□ 0.57
VRK3-221ENST00000600284 PHF24Q9UPV7 400 aa18.64■□□□□ 0.57
VRK3-221ENST00000600284 ZNF213O14771 459 aa18.63■□□□□ 0.57
VRK3-221ENST00000600284 ADCYAP1R1P41586 468 aa18.63■□□□□ 0.57
VRK3-221ENST00000600284 RTP1P59025 263 aa18.63■□□□□ 0.57
VRK3-221ENST00000600284 HAND2P61296 217 aa18.63■□□□□ 0.57
VRK3-221ENST00000600284 CWC27Q6UX04 472 aaKnown RBP18.63■□□□□ 0.57
VRK3-221ENST00000600284 AGBL1Q96MI9 1066 aa18.63■□□□□ 0.57
VRK3-221ENST00000600284 TRERF1Q96PN7 1200 aa18.63■□□□□ 0.57
VRK3-221ENST00000600284 TSEN34Q9BSV6 310 aaKnown RBP18.63■□□□□ 0.57
VRK3-221ENST00000600284 ABHD16BQ9H3Z7 469 aa18.63■□□□□ 0.57
VRK3-221ENST00000600284 RNF146Q9NTX7 359 aa18.63■□□□□ 0.57
VRK3-221ENST00000600284 PRKAG2Q9UGJ0 569 aa18.63■□□□□ 0.57
VRK3-221ENST00000600284 MYCNP04198 464 aaPredicted RBP18.62■□□□□ 0.57
VRK3-221ENST00000600284 ACVR2BQ13705 512 aa18.62■□□□□ 0.57
VRK3-221ENST00000600284 CCDC178Q5BJE1 867 aa18.62■□□□□ 0.57
VRK3-221ENST00000600284 TDHQ8IZJ6 230 aa18.62■□□□□ 0.57
VRK3-221ENST00000600284 FAM133AQ8N9E0 248 aa18.62■□□□□ 0.57
VRK3-221ENST00000600284 ESR2Q92731 530 aa18.62■□□□□ 0.57
VRK3-221ENST00000600284 DSCC1Q9BVC3 393 aa18.62■□□□□ 0.57
VRK3-221ENST00000600284 UBE2OQ9C0C9 1292 aaKnown RBP18.62■□□□□ 0.57
VRK3-221ENST00000600284 HOMER2Q9NSB8 354 aa18.62■□□□□ 0.57
VRK3-221ENST00000600284 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.62■□□□□ 0.57
VRK3-221ENST00000600284 SMCHD1A6NHR9 2005 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 POTEB2H3BUK9 544 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 ADAMTS4O75173 837 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 DUSP11O75319 330 aaKnown RBP18.61■□□□□ 0.57
VRK3-221ENST00000600284 PGK1P00558 417 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 CCDC96Q2M329 555 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 LRIT3Q3SXY7 679 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 TBC1D10CQ8IV04 446 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 FGD4Q96M96 766 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 RANBP17Q9H2T7 1088 aaKnown RBP18.61■□□□□ 0.57
VRK3-221ENST00000600284 A1CFQ9NQ94 594 aaKnown RBP18.61■□□□□ 0.57
VRK3-221ENST00000600284 ZHX1Q9UKY1 873 aaPredicted RBP18.61■□□□□ 0.57
VRK3-221ENST00000600284 PNMA2Q9UL42 364 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 ATP11BQ9Y2G3 1177 aa18.61■□□□□ 0.57
VRK3-221ENST00000600284 ASB14A6NK59 587 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 ICAM1P05362 532 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 ALAS1P13196 640 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 GPR153Q6NV75 609 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 CCDC174Q6PII3 467 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 ARMCX2Q7L311 632 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 DGKHQ86XP1 1220 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 FERMT2Q96AC1 680 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 CHMP4CQ96CF2 233 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 LBHD1Q9BQE6 289 aaPredicted RBP18.6■□□□□ 0.57
VRK3-221ENST00000600284 CTNNA3Q9UI47 895 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 MTMR7Q9Y216 660 aa18.6■□□□□ 0.57
VRK3-221ENST00000600284 MOXD2PA6NHM9 499 aa18.59■□□□□ 0.57
VRK3-221ENST00000600284 SNHG28P0DPA3 235 aa18.59■□□□□ 0.57
VRK3-221ENST00000600284 PDHBP11177 359 aa18.59■□□□□ 0.57
VRK3-221ENST00000600284 CNTN2Q02246 1040 aa18.59■□□□□ 0.57
VRK3-221ENST00000600284 SYDE2Q5VT97 1194 aa18.59■□□□□ 0.57
VRK3-221ENST00000600284 TTBK2Q6IQ55 1244 aa18.59■□□□□ 0.57
VRK3-221ENST00000600284 CCDC144CPQ8IYA2 1237 aa18.59■□□□□ 0.57
VRK3-221ENST00000600284 KLHDC9Q8NEP7 349 aa18.59■□□□□ 0.57
VRK3-221ENST00000600284 CCPG1Q9ULG6 757 aa18.59■□□□□ 0.57
VRK3-221ENST00000600284 SYNRGQ9UMZ2 1314 aa18.58■□□□□ 0.57
VRK3-221ENST00000600284 CST5P28325 142 aaPredicted RBP18.58■□□□□ 0.56
VRK3-221ENST00000600284 MDM2Q00987 491 aaPredicted RBP18.58■□□□□ 0.56
VRK3-221ENST00000600284 IMMTQ16891 758 aaKnown RBP18.58■□□□□ 0.56
VRK3-221ENST00000600284 TRIM60Q495X7 471 aa18.58■□□□□ 0.56
VRK3-221ENST00000600284 RASGRP2Q7LDG7 609 aa18.58■□□□□ 0.56
VRK3-221ENST00000600284 IQCA1Q86XH1 822 aa18.58■□□□□ 0.56
VRK3-221ENST00000600284 NUP133Q8WUM0 1156 aa18.58■□□□□ 0.56
VRK3-221ENST00000600284 SPC25Q9HBM1 224 aa18.58■□□□□ 0.56
VRK3-221ENST00000600284 CYP39A1Q9NYL5 469 aa18.58■□□□□ 0.56
VRK3-221ENST00000600284 DNAH12Q6ZR08 3092 aa18.58■□□□□ 0.56
VRK3-221ENST00000600284 NEDD4P46934 1319 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 A0A1W2PQ45 241 aaPredicted RBP18.57■□□□□ 0.56
VRK3-221ENST00000600284 A0A1W2PQY0 241 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 SOWAHBA6NEL2 793 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 SOX1O00570 391 aaPredicted RBP18.57■□□□□ 0.56
VRK3-221ENST00000600284 SLC16A2P36021 539 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 SNAP25P60880 206 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 ZNF543Q08ER8 600 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 CCDC144BQ3MJ40 725 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 MUM1L1Q5H9M0 696 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 GPATCH4Q5T3I0 446 aaKnown RBP18.57■□□□□ 0.56
VRK3-221ENST00000600284 TTC22Q5TAA0 569 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 CCSAPQ6IQ19 270 aaPredicted RBP18.57■□□□□ 0.56
VRK3-221ENST00000600284 ANKS1AQ92625 1134 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 KATNBL1Q9H079 304 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 UPF3AQ9H1J1 476 aaKnown RBP18.57■□□□□ 0.56
VRK3-221ENST00000600284 GPCPD1Q9NPB8 672 aa18.57■□□□□ 0.56
VRK3-221ENST00000600284 FRMPD2Q68DX3 1309 aaPredicted RBP18.56■□□□□ 0.56
VRK3-221ENST00000600284 LOC102724159A0A0B4J2E5 919 aa18.56■□□□□ 0.56
VRK3-221ENST00000600284 PDE4AP27815 886 aa18.56■□□□□ 0.56
VRK3-221ENST00000600284 ACLYP53396 1101 aa18.56■□□□□ 0.56
VRK3-221ENST00000600284 GJA9P57773 515 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms