RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 STRNO43815 780 aa22.81■■□□□ 1.24
SHKBP1-221ENST00000599833 ZKSCAN1P17029 563 aaPredicted RBP22.81■■□□□ 1.24
SHKBP1-221ENST00000599833 CYP2B6P20813 491 aa22.81■■□□□ 1.24
SHKBP1-221ENST00000599833 KRT32Q14532 448 aa22.81■■□□□ 1.24
SHKBP1-221ENST00000599833 SART3Q15020 963 aaKnown RBP22.81■■□□□ 1.24
SHKBP1-221ENST00000599833 DHX32Q7L7V1 743 aaKnown RBP22.81■■□□□ 1.24
SHKBP1-221ENST00000599833 SGMS1Q86VZ5 419 aa22.81■■□□□ 1.24
SHKBP1-221ENST00000599833 ISY1Q9ULR0 285 aaKnown RBP22.81■■□□□ 1.24
SHKBP1-221ENST00000599833 IKQ13123 557 aaPredicted RBP22.8■■□□□ 1.24
SHKBP1-221ENST00000599833 MTFR1Q15390 333 aa22.8■■□□□ 1.24
SHKBP1-221ENST00000599833 MAP3K21Q5TCX8 1036 aa22.8■■□□□ 1.24
SHKBP1-221ENST00000599833 WDR78Q5VTH9 848 aa22.8■■□□□ 1.24
SHKBP1-221ENST00000599833 NBPF11Q86T75 865 aa22.8■■□□□ 1.24
SHKBP1-221ENST00000599833 MTMR8Q96EF0 704 aa22.8■■□□□ 1.24
SHKBP1-221ENST00000599833 APBA2Q99767 749 aa22.8■■□□□ 1.24
SHKBP1-221ENST00000599833 DNAJC25-GNG10A0A024R161 153 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 ERICH2A1L162 156 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 CYTH3O43739 400 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 ICAM1P05362 532 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 PARP1P09874 1014 aaKnown RBP22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 COPB2P35606 906 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 RGS2P41220 211 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 CCDC174Q6PII3 467 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 ADGRF4Q8IZF3 695 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 ZNF654Q8IZM8 581 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 IL17RAQ96F46 866 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 MYL10Q9BUA6 226 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 JMJD4Q9H9V9 463 aa22.79■■□□□ 1.24
SHKBP1-221ENST00000599833 INHAP05111 366 aa22.78■■□□□ 1.24
SHKBP1-221ENST00000599833 MUM1L1Q5H9M0 696 aa22.78■■□□□ 1.24
SHKBP1-221ENST00000599833 CCAR1Q8IX12 1150 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-221ENST00000599833 FGD4Q96M96 766 aa22.78■■□□□ 1.24
SHKBP1-221ENST00000599833 JAKMIP1Q96N16 626 aaKnown RBP22.78■■□□□ 1.24
SHKBP1-221ENST00000599833 MAP3K14Q99558 947 aa22.78■■□□□ 1.24
SHKBP1-221ENST00000599833 AGXT2Q9BYV1 514 aa22.78■■□□□ 1.24
SHKBP1-221ENST00000599833 CCDC85CA6NKD9 419 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 KLRF2D3W0D1 207 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 DDAH1O94760 285 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 FCER1AP12319 257 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 ZNF792Q3KQV3 632 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 FBXL16Q8N461 479 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 CHST13Q8NET6 341 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 MMP19Q99542 508 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 RIOX1Q9H6W3 641 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 BRPF3Q9ULD4 1205 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 IVNS1ABPQ9Y6Y0 642 aa22.77■■□□□ 1.24
SHKBP1-221ENST00000599833 HMGCRP04035 888 aa22.76■■□□□ 1.23
SHKBP1-221ENST00000599833 PGK2P07205 417 aa22.76■■□□□ 1.23
SHKBP1-221ENST00000599833 CLEC4DQ8WXI8 215 aa22.76■■□□□ 1.23
SHKBP1-221ENST00000599833 ZSWIM6Q9HCJ5 1215 aa22.76■■□□□ 1.23
SHKBP1-221ENST00000599833 RNF146Q9NTX7 359 aa22.76■■□□□ 1.23
SHKBP1-221ENST00000599833 DNAH12Q6ZR08 3092 aa22.76■■□□□ 1.23
SHKBP1-221ENST00000599833 POTEFA5A3E0 1075 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 PPP1R11O60927 126 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 HMGB1P09429 215 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 RPS6KB1P23443 525 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 CDC37Q16543 378 aaPredicted RBP22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 TKFCQ3LXA3 575 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 CATIPQ7Z7H3 387 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 TMTC2Q8N394 836 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 UNC93B1Q9H1C4 597 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 A1CFQ9NQ94 594 aaKnown RBP22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 HOMER2Q9NSB8 354 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 CCPG1Q9ULG6 757 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 GTF3C3Q9Y5Q9 886 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 MCM3APO60318 1980 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 ASTN1O14525 1302 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 FRMPD3Q5JV73 1810 aa22.75■■□□□ 1.23
SHKBP1-221ENST00000599833 RXRAP19793 462 aa22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 QRICH1Q2TAL8 776 aa22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 OLFML2BQ68BL8 750 aa22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 APOA5Q6Q788 366 aa22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 MAML3Q96JK9 1138 aa22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 TRERF1Q96PN7 1200 aa22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 TM6SF1Q9BZW5 370 aa22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 ACAD9Q9H845 621 aa22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 CWC22Q9HCG8 908 aaKnown RBP22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 FBXO40Q9UH90 709 aa22.74■■□□□ 1.23
SHKBP1-221ENST00000599833 ALAS1P13196 640 aa22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 CCL5P13501 91 aa22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 SOX10P56693 466 aa22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 CACNB2Q08289 660 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 KCTD2Q14681 263 aa22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 RAB11FIP4Q86YS3 637 aa22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 PAK6Q9NQU5 681 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 DIS3Q9Y2L1 958 aaKnown RBP22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 CTDP1Q9Y5B0 961 aaPredicted RBP22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 LRRC37A2A6NM11 1700 aa22.73■■□□□ 1.23
SHKBP1-221ENST00000599833 NFIBO00712 420 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 PLEKHA8P1O95397 391 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 CASTP20810 708 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 SLC4A3P48751 1232 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 BLOC1S2Q6QNY1 142 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 Q6ZUG5 572 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 DPP9Q86TI2 863 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 TRMT44Q8IYL2 757 aaKnown RBP22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 FAM133AQ8N9E0 248 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 TRPV1Q8NER1 839 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 NUP133Q8WUM0 1156 aa22.72■■□□□ 1.23
SHKBP1-221ENST00000599833 FAM217BQ9NTX9 383 aaPredicted RBP22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms