RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 MUM1L1Q5H9M0 696 aa16.59■□□□□ 0.25
SHKBP1-217ENST00000598558 BLOC1S2Q6QNY1 142 aa16.59■□□□□ 0.25
SHKBP1-217ENST00000598558 NFXL1Q6ZNB6 911 aa16.59■□□□□ 0.25
SHKBP1-217ENST00000598558 Q6ZUG5 572 aa16.59■□□□□ 0.25
SHKBP1-217ENST00000598558 CATIPQ7Z7H3 387 aa16.59■□□□□ 0.25
SHKBP1-217ENST00000598558 NUP133Q8WUM0 1156 aa16.59■□□□□ 0.25
SHKBP1-217ENST00000598558 ARMC5Q96C12 935 aa16.59■□□□□ 0.25
SHKBP1-217ENST00000598558 IGHA2P01877 340 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 ICAM1P05362 532 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 PGK2P07205 417 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 MTFR1Q15390 333 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 CCDC144CPQ8IYA2 1237 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 TMTC2Q8N394 836 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 TRIB2Q92519 343 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 MTMR8Q96EF0 704 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 UPF3BQ9BZI7 483 aaKnown RBP16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 HOMER2Q9NSB8 354 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 CTDP1Q9Y5B0 961 aaPredicted RBP16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 PLXNB2O15031 1838 aa16.58■□□□□ 0.24
SHKBP1-217ENST00000598558 CCDC69A6NI79 296 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 STRNO43815 780 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 PPP1R11O60927 126 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 PLEKHA8P1O95397 391 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 MYCP01106 439 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 HMGB1P09429 215 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 ALAS1P13196 640 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 APOBRQ0VD83 1088 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 SLC9C1Q4G0N8 1177 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 APOA5Q6Q788 366 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 CMTR1Q8N1G2 835 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 PXYLP1Q8TE99 480 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 IL17RAQ96F46 866 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 ZNF333Q96JL9 665 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 MMP19Q99542 508 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 LARP6Q9BRS8 491 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 AGXT2Q9BYV1 514 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 TM6SF1Q9BZW5 370 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 RIOX1Q9H6W3 641 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 CWC22Q9HCG8 908 aaKnown RBP16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 FAM217BQ9NTX9 383 aaPredicted RBP16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 CCPG1Q9ULG6 757 aa16.57■□□□□ 0.24
SHKBP1-217ENST00000598558 DDAH1O94760 285 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 HOXC6P09630 235 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 FCER1AP12319 257 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 XRCC5P13010 732 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 PSMA5P28066 241 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 RGS2P41220 211 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 TOB2Q14106 344 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 CDC37Q16543 378 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 QRICH1Q2TAL8 776 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 RUFY3Q7L099 469 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 ABRAQ8N0Z2 381 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 SRBD1Q8N5C6 995 aaKnown RBP16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 SOCS4Q8WXH5 440 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 CLEC4DQ8WXI8 215 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 BRF1Q92994 677 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 FGD4Q96M96 766 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 TRERF1Q96PN7 1200 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 MAP3K14Q99558 947 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 RNF146Q9NTX7 359 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 SLC12A7Q9Y666 1083 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 IVNS1ABPQ9Y6Y0 642 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 MGAMO43451 1857 aa16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 COL11A1P12107 1806 aaPredicted RBP16.56■□□□□ 0.24
SHKBP1-217ENST00000598558 DNAJC25-GNG10A0A024R161 153 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 KLF18A0A0U1RQI7 1052 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 CCDC85CA6NKD9 419 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 ZNF792Q3KQV3 632 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 FBXL16Q8N461 479 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 FANCBQ8NB91 859 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 SLAIN1Q8ND83 568 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 CHST13Q8NET6 341 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 TBC1D5Q92609 795 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 PURBQ96QR8 312 aaKnown RBP16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 PIGSQ96S52 555 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 APBA2Q99767 749 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 DOCK3Q8IZD9 2030 aa16.55■□□□□ 0.24
SHKBP1-217ENST00000598558 NFIBO00712 420 aa16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 INHAP05111 366 aa16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 CDC27P30260 824 aa16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 COPB2P35606 906 aa16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 CNTN2Q02246 1040 aa16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 TKFCQ3LXA3 575 aa16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 DPP9Q86TI2 863 aa16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 MICU3Q86XE3 530 aa16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 PIBF1Q8WXW3 757 aa16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 A1CFQ9NQ94 594 aaKnown RBP16.54■□□□□ 0.24
SHKBP1-217ENST00000598558 DHX16O60231 1041 aaKnown RBP16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 CAPN15O75808 1086 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 CYP2C19P33261 490 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 ANAPC15P60006 121 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 CACNB2Q08289 660 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 FUT2Q10981 343 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 KCTD2Q14681 263 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 USH1GQ495M9 461 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 CCDC82Q8N4S0 544 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 CTCFLQ8NI51 663 aaPredicted RBP16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 MAML3Q96JK9 1138 aa16.53■□□□□ 0.24
SHKBP1-217ENST00000598558 KIF2CQ99661 725 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms