RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	TACC3	Q9Y6A5	838 aa		12.51	□□□□□ -0.41
LSM4-205	ENST00000597776	CDH23	Q9H251	3354 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	MCC	P23508	829 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	SLC1A4	P43007	532 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	STAT2	P52630	851 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	OAZ1	P54368	228 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	CNTN2	Q02246	1040 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	KCNA10	Q16322	511 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	CCDC144B	Q3MJ40	725 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	ANKRD45	Q5TZF3	282 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	CCSAP	Q6IQ19	270 aa	Predicted RBP	12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	KCTD1	Q719H9	257 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	12.5	□□□□□ -0.41	1e-9	■■■■□ 22.7
LSM4-205	ENST00000597776	ARMCX2	Q7L311	632 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	CHST13	Q8NET6	341 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	GMCL1	Q96IK5	515 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	AGBL1	Q96MI9	1066 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	TSEN34	Q9BSV6	310 aa	Known RBP	12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	STARD7	Q9NQZ5	370 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	IL17RB	Q9NRM6	502 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	FBXO40	Q9UH90	709 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	STX8	Q9UNK0	236 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	MTMR7	Q9Y216	660 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	DDX49	Q9Y6V7	483 aa	Known RBP	12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	ZNF536	O15090	1300 aa		12.5	□□□□□ -0.41
LSM4-205	ENST00000597776	MCM3AP	O60318	1980 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	TSPY2	A6NKD2	308 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	KIAA0355	O15063	1070 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	DUSP11	O75319	330 aa	Known RBP	12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	C6orf222	P0C671	652 aa	Predicted RBP	12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	RAG1	P15918	1043 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	FAAP100	Q0VG06	881 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	ZNF697	Q5TEC3	545 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	CCDC174	Q6PII3	467 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	FAM160B2	Q86V87	743 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	CCDC144CP	Q8IYA2	1237 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	NUP133	Q8WUM0	1156 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	STAG1	Q8WVM7	1258 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	KATNBL1	Q9H079	304 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	ACAD9	Q9H845	621 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	RNF146	Q9NTX7	359 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	TMEM39A	Q9NV64	488 aa		12.49	□□□□□ -0.41
LSM4-205	ENST00000597776	SOWAHB	A6NEL2	793 aa		12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	MOXD2P	A6NHM9	499 aa		12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	RANBP6	O60518	1105 aa	Known RBP	12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	ALAS1	P13196	640 aa		12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	ANKRD33	Q7Z3H0	272 aa		12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	FAM133A	Q8N9E0	248 aa		12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	CHURC1	Q8WUH1	139 aa		12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	RNPC3	Q96LT9	517 aa	Known RBP	12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	FAM227B	Q96M60	508 aa		12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	ABHD16B	Q9H3Z7	469 aa		12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	A1CF	Q9NQ94	594 aa	Known RBP	12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.48	□□□□□ -0.41
LSM4-205	ENST00000597776	ASTN1	O14525	1302 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776		A0A0D9SFI3	127 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	DCDC2C	A8MYV0	355 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	ASGR1	P07306	291 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	FDX1	P10109	184 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	PTGS1	P23219	599 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	CST5	P28325	142 aa	Predicted RBP	12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	PDE1A	P54750	535 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	FPGS	Q05932	587 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	CCDC96	Q2M329	555 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	MUM1L1	Q5H9M0	696 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	RCSD1	Q6JBY9	416 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	EVI5L	Q96CN4	794 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	GLT1D1	Q96MS3	346 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	TRERF1	Q96PN7	1200 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	UPF3A	Q9H1J1	476 aa	Known RBP	12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	ANAPC4	Q9UJX5	808 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	PRR12	Q9ULL5	1215 aa		12.47	□□□□□ -0.41
LSM4-205	ENST00000597776	LRRC37A2	A6NM11	1700 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	CTAGE5	O15320	804 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	GJA9	P57773	515 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	SMAD3	P84022	425 aa	Known RBP	12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	BEX3	Q00994	111 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	RRP12	Q5JTH9	1297 aa	Known RBP	12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	GNAS	Q5JWF2	1037 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	PPP4R3B	Q5MIZ7	849 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	TTBK2	Q6IQ55	1244 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	NOL8	Q76FK4	1167 aa	Known RBP	12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	VTI1A	Q96AJ9	217 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	TOX2	Q96NM4	488 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	PURB	Q96QR8	312 aa	Known RBP	12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	CDX2	Q99626	313 aa	Predicted RBP	12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	TTYH1	Q9H313	450 aa	Predicted RBP	12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	SEMA6B	Q9H3T3	888 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	SPC25	Q9HBM1	224 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	TOMM22	Q9NS69	142 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	TBX21	Q9UL17	535 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	PRUNE2	Q8WUY3	3088 aa		12.46	□□□□□ -0.41
LSM4-205	ENST00000597776	ELP1	O95163	1332 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	ORC4	O43929	436 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	PLA2G6	O60733	806 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	FGA	P02671	866 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	SLC16A2	P36021	539 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	NOV	P48745	357 aa		12.45	□□□□□ -0.42
LSM4-205	ENST00000597776	CDK7	P50613	346 aa		12.45	□□□□□ -0.42

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