RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 LIMA1Q9UHB6 759 aaKnown RBP17.08■□□□□ 0.33
UPF1-204ENST00000596842 RAD21O60216 631 aa17.08■□□□□ 0.32
UPF1-204ENST00000596842 DYMQ7RTS9 669 aa17.08■□□□□ 0.32
UPF1-204ENST00000596842 PNMA1Q8ND90 353 aa17.08■□□□□ 0.32
UPF1-204ENST00000596842 TUBGCP2Q9BSJ2 902 aa17.08■□□□□ 0.32
UPF1-204ENST00000596842 REXO2Q9Y3B8 237 aaKnown RBP17.08■□□□□ 0.32
UPF1-204ENST00000596842 H0YHG0 523 aa17.08■□□□□ 0.32
UPF1-204ENST00000596842 RNF40O75150 1001 aa17.08■□□□□ 0.32
UPF1-204ENST00000596842 TTC31Q49AM3 519 aaPredicted RBP17.08■□□□□ 0.32
UPF1-204ENST00000596842 SMARCC1Q92922 1105 aaPredicted RBP17.08■□□□□ 0.32
UPF1-204ENST00000596842 NOC4LQ9BVI4 516 aaKnown RBP17.08■□□□□ 0.32
UPF1-204ENST00000596842 ALS2Q96Q42 1657 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 MAP2K7O14733 419 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 FCER1AP12319 257 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 RNASE9P60153 205 aaKnown RBP17.07■□□□□ 0.32
UPF1-204ENST00000596842 FAM84BQ96KN1 310 aaPredicted RBP17.07■□□□□ 0.32
UPF1-204ENST00000596842 MYCBPQ99417 103 aaPredicted RBP17.07■□□□□ 0.32
UPF1-204ENST00000596842 SLC39A2Q9NP94 309 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 DCP1AQ9NPI6 582 aaPredicted RBP17.07■□□□□ 0.32
UPF1-204ENST00000596842 DISC1Q9NRI5 854 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 KRT86O43790 486 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 CCNT1O60563 726 aaKnown RBP17.07■□□□□ 0.32
UPF1-204ENST00000596842 PLEKP08567 350 aaPredicted RBP17.07■□□□□ 0.32
UPF1-204ENST00000596842 KIF5BP33176 963 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 SLC7A5Q01650 507 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 EXOC1Q9NV70 894 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 RRP15Q9Y3B9 282 aaKnown RBP17.07■□□□□ 0.32
UPF1-204ENST00000596842 SSBP05455 408 aaKnown RBP eCLIP17.07■□□□□ 0.32
UPF1-204ENST00000596842 TECP42680 631 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 KCTD19Q17RG1 926 aaPredicted RBP17.07■□□□□ 0.32
UPF1-204ENST00000596842 GOLGA5Q8TBA6 731 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 CCDC42Q96M95 316 aa17.07■□□□□ 0.32
UPF1-204ENST00000596842 GLI3P10071 1580 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 H7C1D1 291 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 TSPY3P0CV98 308 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 TSPY8P0CW00 308 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 SLC51AQ86UW1 340 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 ZNF384Q8TF68 577 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 NUP188Q5SRE5 1749 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 LOC102724428A0A0B4J2F2 783 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 NKRFO15226 690 aaKnown RBP eCLIP17.06■□□□□ 0.32
UPF1-204ENST00000596842 SIK1P57059 783 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 PPP2R5BQ15173 497 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 SPA17Q15506 151 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 GPR101Q96P66 508 aaPredicted RBP17.06■□□□□ 0.32
UPF1-204ENST00000596842 EHD2Q9NZN4 543 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 TNS2Q63HR2 1409 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 LAMB4A4D0S4 1761 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 RCCD1A6NED2 376 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 DIXDC1Q155Q3 683 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 C2CD5Q86YS7 1000 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 IRF2BP1Q8IU81 584 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 TCP11L1Q9NUJ3 509 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 LRWD1Q9UFC0 647 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 COL18A1P39060 1754 aa17.06■□□□□ 0.32
UPF1-204ENST00000596842 CYLC1P35663 651 aaPredicted RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 NAPAP54920 295 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 ARID5AQ03989 594 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 KIF5AQ12840 1032 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 PFKFB3Q16875 520 aaPredicted RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 UBXN6Q9BZV1 441 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 NHEJ1Q9H9Q4 299 aaPredicted RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 MINPP1Q9UNW1 487 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 ZNF335Q9H4Z2 1342 aaPredicted RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 NUTM2BA6NNL0 878 aaPredicted RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 NUTM2EB1AL46 878 aaPredicted RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 PLCG1P19174 1290 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 HERVK_113P62684 666 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 PTPROQ16827 1216 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 MSANTD4Q8NCY6 345 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 CCDC47Q96A33 483 aaKnown RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 CNOT6LQ96LI5 555 aaKnown RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 AKR1B10O60218 316 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 DDAH1O94760 285 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 TXKP42681 527 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 ITPK1Q13572 414 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 CCDC181Q5TID7 509 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 INTS5Q6P9B9 1019 aaKnown RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 ZNF444Q8N0Y2 327 aaPredicted RBP17.05■□□□□ 0.32
UPF1-204ENST00000596842 HAUS4Q9H6D7 363 aa17.05■□□□□ 0.32
UPF1-204ENST00000596842 SEMA3EO15041 775 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 LGALS16A8MUM7 142 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 MARCH6O60337 910 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 NTSR2O95665 410 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 CALML3P27482 149 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 STK4Q13043 487 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 TRIM14Q14142 442 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 TDRD12Q587J7 1177 aaKnown RBP17.04■□□□□ 0.32
UPF1-204ENST00000596842 MAPKAPK5Q8IW41 473 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 MICALL1Q8N3F8 863 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 TNFRSF25Q93038 417 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 CENPHQ9H3R5 247 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 MLXIPQ9HAP2 919 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 BAZ2AQ9UIF9 1905 aaKnown RBP17.04■□□□□ 0.32
UPF1-204ENST00000596842 LMTK3Q96Q04 1460 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 CAMTA2O94983 1202 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 KRT83P78385 493 aa17.04■□□□□ 0.32
UPF1-204ENST00000596842 SETQ01105 290 aaPredicted RBP17.04■□□□□ 0.32
UPF1-204ENST00000596842 EZH2Q15910 746 aaKnown RBP17.04■□□□□ 0.32
UPF1-204ENST00000596842 CABP7Q86V35 215 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 134.2 ms