RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 STAG1Q8WVM7 1258 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 HOMER2Q9NSB8 354 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 STX8Q9UNK0 236 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 MTMR7Q9Y216 660 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 GTF3C3Q9Y5Q9 886 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 TAF6LQ9Y6J9 622 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 LRRC37A2A6NM11 1700 aa12.42□□□□□ -0.42
LIG1-213ENST00000596672 ZMYM6O95789 1325 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 PLA2G6O60733 806 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 ZBED4O75132 1171 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 ITGB8P26012 769 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 BMP8BP34820 402 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 SLC1A4P43007 532 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 SNX17Q15036 470 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 RRP12Q5JTH9 1297 aaKnown RBP12.41□□□□□ -0.42
LIG1-213ENST00000596672 CCSAPQ6IQ19 270 aaPredicted RBP12.41□□□□□ -0.42
LIG1-213ENST00000596672 SLC39A5Q6ZMH5 540 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 SKAP1Q86WV1 359 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 FAM133AQ8N9E0 248 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 CPVLQ9H3G5 476 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 ZNF287Q9HBT7 754 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 A1CFQ9NQ94 594 aaKnown RBP12.41□□□□□ -0.42
LIG1-213ENST00000596672 TCP11L1Q9NUJ3 509 aa12.41□□□□□ -0.42
LIG1-213ENST00000596672 FRMPD2Q68DX3 1309 aaPredicted RBP12.4□□□□□ -0.42
LIG1-213ENST00000596672 CDH23Q9H251 3354 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 MSCO60682 206 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 SLC3A2P08195 630 aaKnown RBP12.4□□□□□ -0.42
LIG1-213ENST00000596672 RTP1P59025 263 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 MDM2Q00987 491 aaPredicted RBP12.4□□□□□ -0.42
LIG1-213ENST00000596672 COL9A3Q14050 684 aaPredicted RBP12.4□□□□□ -0.42
LIG1-213ENST00000596672 TRIM60Q495X7 471 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 AKNAD1Q5T1N1 836 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 CCDC174Q6PII3 467 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 BTNL9Q6UXG8 535 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 TICAM2Q86XR7 235 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 KLHDC9Q8NEP7 349 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 ZKSCAN3Q9BRR0 538 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 RNF146Q9NTX7 359 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.4□□□□□ -0.42
LIG1-213ENST00000596672 ZBTB47Q9UFB7 747 aaPredicted RBP12.4□□□□□ -0.42
LIG1-213ENST00000596672 PHF24Q9UPV7 400 aa12.4□□□□□ -0.42
LIG1-213ENST00000596672 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.39□□□□□ -0.43
LIG1-213ENST00000596672 TRIM43BA6NCK2 446 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 RBAK-RBAKDNI3L0D1 243 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 MYCNP04198 464 aaPredicted RBP12.39□□□□□ -0.43
LIG1-213ENST00000596672 SNHG28P0DPA3 235 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 PDHBP11177 359 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 STAT2P52630 851 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 OAZ1P54368 228 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 CHST13Q8NET6 341 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 TRIM43Q96BQ3 446 aaPredicted RBP12.39□□□□□ -0.43
LIG1-213ENST00000596672 DDX11Q96FC9 970 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 RANBP17Q9H2T7 1088 aaKnown RBP12.39□□□□□ -0.43
LIG1-213ENST00000596672 GPCPD1Q9NPB8 672 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 XPNPEP3Q9NQH7 507 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 NRBP1Q9UHY1 535 aa12.39□□□□□ -0.43
LIG1-213ENST00000596672 SYNRGQ9UMZ2 1314 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 TOP1P11387 765 aaKnown RBP12.38□□□□□ -0.43
LIG1-213ENST00000596672 ALAS1P13196 640 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 COPB2P35606 906 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 PTH1RQ03431 593 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 SLC35G1Q2M3R5 365 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 TTC22Q5TAA0 569 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 ARMCX2Q7L311 632 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 ZNF467Q7Z7K2 595 aaPredicted RBP12.38□□□□□ -0.43
LIG1-213ENST00000596672 FAM160B2Q86V87 743 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 CCDC144CPQ8IYA2 1237 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 ARRDC4Q8NCT1 418 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 CHURC1Q8WUH1 139 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 CLEC4DQ8WXI8 215 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 TRERF1Q96PN7 1200 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 PDGFCQ9NRA1 345 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 TOMM22Q9NS69 142 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 SLC5A4Q9NY91 659 aa12.38□□□□□ -0.43
LIG1-213ENST00000596672 SYNGAP1Q96PV0 1343 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 B4E1Z4 1266 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 NFIBO00712 420 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 GOLGA8HP0CJ92 632 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 EPHB4P54760 987 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 TLE2Q04725 743 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 ZNF543Q08ER8 600 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 ACVR2BQ13705 512 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 CCDC144BQ3MJ40 725 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 SYDE2Q5VT97 1194 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 ANKRD35Q8N283 1001 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 DCAF4Q8WV16 495 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 TBC1D5Q92609 795 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 ACAD9Q9H845 621 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 PDLIM7Q9NR12 457 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 CYP39A1Q9NYL5 469 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 ZHX1Q9UKY1 873 aaPredicted RBP12.37□□□□□ -0.43
LIG1-213ENST00000596672 ISY1Q9ULR0 285 aaKnown RBP12.37□□□□□ -0.43
LIG1-213ENST00000596672 ATP11BQ9Y2G3 1177 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 MYO9BQ13459 2157 aa12.37□□□□□ -0.43
LIG1-213ENST00000596672 A0A1W2PPC1 479 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 A0A1W2PQ45 241 aaPredicted RBP12.36□□□□□ -0.43
LIG1-213ENST00000596672 A0A1W2PQY0 241 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 KDM4AO75164 1064 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 RARBP10826 455 aa12.36□□□□□ -0.43
LIG1-213ENST00000596672 AKR1A1P14550 325 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms