RNA–Protein interactions for RNA: ENST00000596445.5

VRK3-211, Transcript of vaccinia related kinase 3, humanhuman

TSL 5

Gene VRK3, Length 840 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-211ENST00000596445 SPZ1Q9BXG8 430 aa9.72□□□□□ -0.85
VRK3-211ENST00000596445 MOV10L1Q9BXT6 1211 aaKnown RBP9.72□□□□□ -0.85
VRK3-211ENST00000596445 CPVLQ9H3G5 476 aa9.72□□□□□ -0.85
VRK3-211ENST00000596445 RIOX1Q9H6W3 641 aa9.72□□□□□ -0.85
VRK3-211ENST00000596445 JMJD4Q9H9V9 463 aa9.72□□□□□ -0.85
VRK3-211ENST00000596445 PRDM10Q9NQV6 1147 aa9.72□□□□□ -0.85
VRK3-211ENST00000596445 RBM28Q9NW13 759 aaKnown RBP9.72□□□□□ -0.85
VRK3-211ENST00000596445 PNMA2Q9UL42 364 aa9.72□□□□□ -0.85
VRK3-211ENST00000596445 HPS5Q9UPZ3 1129 aa9.72□□□□□ -0.85
VRK3-211ENST00000596445 PLXNB2O15031 1838 aa9.71□□□□□ -0.85
VRK3-211ENST00000596445 CYTH3O43739 400 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 DHX16O60231 1041 aaKnown RBP9.71□□□□□ -0.86
VRK3-211ENST00000596445 PLEKHA8P1O95397 391 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 GNRH1P01148 92 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 ICAM1P05362 532 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 CTGFP29279 349 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 COPB2P35606 906 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 FCGRTP55899 365 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 SNAP25P60880 206 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 SLC35G1Q2M3R5 365 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 SNRNP48Q6IEG0 339 aaKnown RBP9.71□□□□□ -0.86
VRK3-211ENST00000596445 CCDC174Q6PII3 467 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 TMTC3Q6ZXV5 915 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 NBPF11Q86T75 865 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 SRBD1Q8N5C6 995 aaKnown RBP9.71□□□□□ -0.86
VRK3-211ENST00000596445 MTMR8Q96EF0 704 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 TRIM47Q96LD4 638 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 LARP6Q9BRS8 491 aaKnown RBP9.71□□□□□ -0.86
VRK3-211ENST00000596445 PORCNQ9H237 461 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 MROH8Q9H579 483 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 RAVER2Q9HCJ3 691 aaKnown RBP9.71□□□□□ -0.86
VRK3-211ENST00000596445 VAT1LQ9HCJ6 419 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 FAM217BQ9NTX9 383 aaPredicted RBP9.71□□□□□ -0.86
VRK3-211ENST00000596445 ZNF536O15090 1300 aa9.71□□□□□ -0.86
VRK3-211ENST00000596445 TNPO2O14787 897 aaKnown RBP9.7□□□□□ -0.86
VRK3-211ENST00000596445 ZBTB5O15062 677 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 FMNL1O95466 1100 aaPredicted RBP9.7□□□□□ -0.86
VRK3-211ENST00000596445 ERCC3P19447 782 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 HOXD10P28358 340 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 CDC27P30260 824 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 ADD1P35611 737 aaKnown RBP9.7□□□□□ -0.86
VRK3-211ENST00000596445 CAP1Q01518 475 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 FUT2Q10981 343 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 CDC37Q16543 378 aaPredicted RBP9.7□□□□□ -0.86
VRK3-211ENST00000596445 TKFCQ3LXA3 575 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 GPR142Q7Z601 462 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 PLEKHH3Q7Z736 793 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 NCAPG2Q86XI2 1143 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 COA7Q96BR5 231 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 AGBL1Q96MI9 1066 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 ARHGAP39Q9C0H5 1083 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 EFCC1Q9HA90 598 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 CWC22Q9HCG8 908 aaKnown RBP9.7□□□□□ -0.86
VRK3-211ENST00000596445 CCPG1Q9ULG6 757 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 TPCN1Q9ULQ1 816 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 LIMCH1Q9UPQ0 1083 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 RIPK3Q9Y572 518 aa9.7□□□□□ -0.86
VRK3-211ENST00000596445 PNMA6FA0A0J9YX94 578 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 STRNO43815 780 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 ST18O60284 1047 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 PFKFB2O60825 505 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 ECM2O94769 699 aaPredicted RBP9.69□□□□□ -0.86
VRK3-211ENST00000596445 ALAS1P13196 640 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 SLC4A3P48751 1232 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 CCT2P78371 535 aaKnown RBP9.69□□□□□ -0.86
VRK3-211ENST00000596445 TRAF1Q13077 416 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 STK3Q13188 491 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 QRICH1Q2TAL8 776 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 WDR78Q5VTH9 848 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.69□□□□□ -0.86
VRK3-211ENST00000596445 FBXO11Q86XK2 927 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 CMTR1Q8N1G2 835 aaKnown RBP9.69□□□□□ -0.86
VRK3-211ENST00000596445 CCDC82Q8N4S0 544 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 CHST13Q8NET6 341 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 RRP36Q96EU6 259 aaKnown RBP9.69□□□□□ -0.86
VRK3-211ENST00000596445 TRERF1Q96PN7 1200 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 PIGSQ96S52 555 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 SLKQ9H2G2 1235 aaPredicted RBP9.69□□□□□ -0.86
VRK3-211ENST00000596445 NCOA5Q9HCD5 579 aaKnown RBP9.69□□□□□ -0.86
VRK3-211ENST00000596445 SEC63Q9UGP8 760 aaKnown RBP9.69□□□□□ -0.86
VRK3-211ENST00000596445 FBXO40Q9UH90 709 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 IVNS1ABPQ9Y6Y0 642 aa9.69□□□□□ -0.86
VRK3-211ENST00000596445 ZNF236Q9UL36 1845 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 CNTNAP5Q8WYK1 1306 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 SLC15A5A6NIM6 579 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 FCER1AP12319 257 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 IFNAR1P17181 557 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 PTPREP23469 700 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 PRMT2P55345 433 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 NTRK3Q16288 839 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 ME3Q16798 604 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 USH1GQ495M9 461 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 MORN1Q5T089 497 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 NOL8Q76FK4 1167 aaKnown RBP9.68□□□□□ -0.86
VRK3-211ENST00000596445 OTOP1Q7RTM1 612 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 CTU1Q7Z7A3 348 aaKnown RBP9.68□□□□□ -0.86
VRK3-211ENST00000596445 HOMER1Q86YM7 354 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 ABRAQ8N0Z2 381 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 SOCS4Q8WXH5 440 aa9.68□□□□□ -0.86
VRK3-211ENST00000596445 PIBF1Q8WXW3 757 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms