RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 PRDM1O75626 825 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 CSF2RAP15509 400 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 SLC4A3P48751 1232 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 OAZ1P54368 228 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 PPIGQ13427 754 aaKnown RBP eCLIP11.91□□□□□ -0.57e-7■■□□□ 12.4
LIG1-209ENST00000596104 ARMCX2Q7L311 632 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 ANKRD35Q8N283 1001 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 FAM133AQ8N9E0 248 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 GMCL1P1Q8NEA9 526 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 SYMPKQ92797 1274 aaKnown RBP11.91□□□□□ -0.5
LIG1-209ENST00000596104 PBX4Q9BYU1 374 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 CHMP4BQ9H444 224 aaKnown RBP11.91□□□□□ -0.5
LIG1-209ENST00000596104 FBXO40Q9UH90 709 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 FEM1BQ9UK73 627 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 PLIN4Q96Q06 1357 aa11.91□□□□□ -0.5
LIG1-209ENST00000596104 ASTN1O14525 1302 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 GRXCR1A8MXD5 290 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 RNF113AO15541 343 aaKnown RBP11.9□□□□□ -0.5
LIG1-209ENST00000596104 CD4P01730 458 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 PBX2P40425 430 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 CNTN2Q02246 1040 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 TJAP1Q5JTD0 557 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 GNASQ5JWF2 1037 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 CCDC144CPQ8IYA2 1237 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 LRRC47Q8N1G4 583 aaKnown RBP11.9□□□□□ -0.5
LIG1-209ENST00000596104 SLC43A3Q8NBI5 491 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 SPC25Q9HBM1 224 aa11.9□□□□□ -0.5
LIG1-209ENST00000596104 C11orf97A0A1B0GVM6 126 aaPredicted RBP11.89□□□□□ -0.51
LIG1-209ENST00000596104 M0R2C6 588 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 TTLL1O95922 423 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 ZFYP08048 801 aaPredicted RBP11.89□□□□□ -0.51
LIG1-209ENST00000596104 ACRP10323 421 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 BMP3P12645 472 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 GNAT2P19087 354 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 TDO2P48775 406 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 TSHZ3Q63HK5 1081 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 SLFN13Q68D06 897 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 PSRC1Q6PGN9 363 aaPredicted RBP11.89□□□□□ -0.51
LIG1-209ENST00000596104 CCDC174Q6PII3 467 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 ZNF365Q70YC5 407 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 ZNF444Q8N0Y2 327 aaPredicted RBP11.89□□□□□ -0.51
LIG1-209ENST00000596104 TMEM199Q8N511 208 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 NEDD1Q8NHV4 660 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 VTI1AQ96AJ9 217 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 PPP1R12CQ9BZL4 782 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 ZNF287Q9HBT7 754 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 A1CFQ9NQ94 594 aaKnown RBP11.89□□□□□ -0.51
LIG1-209ENST00000596104 CTDP1Q9Y5B0 961 aaPredicted RBP11.89□□□□□ -0.51
LIG1-209ENST00000596104 MYH8P13535 1937 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 ZNFX1Q9P2E3 1918 aaKnown RBP11.89□□□□□ -0.51
LIG1-209ENST00000596104 PLXNA1Q9UIW2 1896 aa11.89□□□□□ -0.51
LIG1-209ENST00000596104 ZNF536O15090 1300 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 SOWAHBA6NEL2 793 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 FDX1P10109 184 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 CYP2C18P33260 490 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 BEX3Q00994 111 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 C20orf194Q5TEA3 1177 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 CXCL17Q6UXB2 119 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 IFNL3Q8IZI9 196 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 HERVK_113Q902F9 699 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 ACAD9Q9H845 621 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 HOMER2Q9NSB8 354 aa11.88□□□□□ -0.51
LIG1-209ENST00000596104 GNEQ9Y223 722 aaKnown RBP11.88□□□□□ -0.51
LIG1-209ENST00000596104 GRIN2DO15399 1336 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 PATL2C9JE40 543 aaKnown RBP11.87□□□□□ -0.51
LIG1-209ENST00000596104 TMEM232C9JQI7 657 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 TLR3O15455 904 aaKnown RBP11.87□□□□□ -0.51
LIG1-209ENST00000596104 PTGS1P23219 599 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 STAT2P52630 851 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 TNFAIP2Q03169 654 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 ADGRE1Q14246 886 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 AKNAD1Q5T1N1 836 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 CCDC129Q6ZRS4 1044 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 FAM160B2Q86V87 743 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 GMCL1Q96IK5 515 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 AGBL1Q96MI9 1066 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 PRDM12Q9H4Q4 367 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 DCTPP1Q9H773 170 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 IL23AQ9NPF7 189 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 RNF146Q9NTX7 359 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 CXXC1Q9P0U4 656 aaPredicted RBP11.87□□□□□ -0.51
LIG1-209ENST00000596104 RCAN3Q9UKA8 241 aa11.87□□□□□ -0.51
LIG1-209ENST00000596104 UMODL1Q5DID0 1318 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 ASB14A6NK59 587 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 PLA2G6O60733 806 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 CABYRO75952 493 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 APPP05067 770 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 TSPY3P0CV98 308 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 TSPY8P0CW00 308 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 TFAP4Q01664 338 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 TKFCQ3LXA3 575 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 TLK2Q86UE8 772 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 CHURC1Q8WUH1 139 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 STAG1Q8WVM7 1258 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 GPATCH3Q96I76 525 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 SEC62Q99442 399 aaKnown RBP11.86□□□□□ -0.51
LIG1-209ENST00000596104 GAS2L1Q99501 681 aaPredicted RBP11.86□□□□□ -0.51
LIG1-209ENST00000596104 HIPK3Q9H422 1215 aa11.86□□□□□ -0.51
LIG1-209ENST00000596104 DDX49Q9Y6V7 483 aaKnown RBP11.86□□□□□ -0.51
LIG1-209ENST00000596104 CHD9Q3L8U1 2897 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms