RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 OXER1Q8TDS5 423 aa12.04□□□□□ -0.48
ZNF540-208ENST00000589857 MAGEF1Q9HAY2 307 aa12.04□□□□□ -0.48
ZNF540-208ENST00000589857 CD209Q9NNX6 404 aa12.04□□□□□ -0.48
ZNF540-208ENST00000589857 COL4A1P02462 1669 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 LAMB1P07942 1786 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.03□□□□□ -0.48
ZNF540-208ENST00000589857 C6orf229H3BNL8 230 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 TRPA1O75762 1119 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 USP17L8P0C7I0 530 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 ATP2B1P20020 1258 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 HOXA7P31268 230 aaPredicted RBP12.03□□□□□ -0.48
ZNF540-208ENST00000589857 BTDP43251 543 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 GPSM2P81274 684 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 FILIP1LQ4L180 1135 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 CEP135Q66GS9 1140 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 C16orf86Q6ZW13 317 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 CMTR1Q8N1G2 835 aaKnown RBP12.03□□□□□ -0.48
ZNF540-208ENST00000589857 SPATA20Q8TB22 786 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 TRPM4Q8TD43 1214 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 SH3RF3Q8TEJ3 882 aaPredicted RBP12.03□□□□□ -0.48
ZNF540-208ENST00000589857 ERCC4Q92889 916 aaPredicted RBP12.03□□□□□ -0.48
ZNF540-208ENST00000589857 CCDC47Q96A33 483 aaKnown RBP12.03□□□□□ -0.48
ZNF540-208ENST00000589857 SPZ1Q9BXG8 430 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 ZC3H12CQ9C0D7 883 aaKnown RBP12.03□□□□□ -0.48
ZNF540-208ENST00000589857 COA1Q9GZY4 146 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 RNF186Q9NXI6 227 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 HDAC9Q9UKV0 1011 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 FAM205AQ6ZU69 1335 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 LTBP1Q14766 1721 aa12.03□□□□□ -0.48
ZNF540-208ENST00000589857 ZSCAN12O43309 604 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 CYP2D6P10635 497 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 GNA11P29992 359 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 CCZ1BP86790 482 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 CCZ1P86791 482 aaPredicted RBP12.02□□□□□ -0.49
ZNF540-208ENST00000589857 SPAG1Q07617 926 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 TBC1D10BQ4KMP7 808 aaPredicted RBP12.02□□□□□ -0.49
ZNF540-208ENST00000589857 RCSD1Q6JBY9 416 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 KRT25Q7Z3Z0 450 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 TXNRD3Q86VQ6 643 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 VSTM4Q8IW00 320 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 C17orf53Q8N3J3 647 aaPredicted RBP12.02□□□□□ -0.49
ZNF540-208ENST00000589857 NEDD1Q8NHV4 660 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 KIF18AQ8NI77 898 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 TGFBRAP1Q8WUH2 860 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 DHX58Q96C10 678 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 CUEDC2Q9H467 287 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 C6orf50Q9HD87 102 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 SEC63Q9UGP8 760 aaKnown RBP12.02□□□□□ -0.49
ZNF540-208ENST00000589857 COL4A5P29400 1685 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 GAKO14976 1311 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 MYO3BQ8WXR4 1341 aa12.02□□□□□ -0.49
ZNF540-208ENST00000589857 WTIPA6NIX2 430 aaPredicted RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 UBE2Q2LH0YL09 131 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 PSMD14O00487 310 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 GTPBP6O43824 516 aaPredicted RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 TPM1P09493 284 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 PARP1P09874 1014 aaKnown RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 PRPHP41219 470 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 PPP1R2P41236 205 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 PTGDRQ13258 359 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 KIF4BQ2VIQ3 1234 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 RBM26Q5T8P6 1007 aaKnown RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 SPATA1Q5VX52 437 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 PIK3AP1Q6ZUJ8 805 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 SAMD7Q7Z3H4 446 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 SH3RF1Q7Z6J0 888 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 CCAR2Q8N163 923 aaKnown RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 SYMPKQ92797 1274 aaKnown RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 RRP36Q96EU6 259 aaKnown RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 AK8Q96MA6 479 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 C16orf45Q96MC5 204 aaPredicted RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 BARHL2Q9NY43 387 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 SWAP70Q9UH65 585 aa12.01□□□□□ -0.49
ZNF540-208ENST00000589857 ZBTB12Q9Y330 459 aaPredicted RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 MYO5AQ9Y4I1 1855 aaKnown RBP12.01□□□□□ -0.49
ZNF540-208ENST00000589857 VWA3AA6NCI4 1184 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 FAM155AB1AL88 458 aaPredicted RBP12□□□□□ -0.49
ZNF540-208ENST00000589857 SLC10A3P09131 477 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 RASA1P20936 1047 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 NF2P35240 595 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 CDK8P49336 464 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 SOX10P56693 466 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 STIM1Q13586 685 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 ZNF174Q15697 407 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 MFSD14BQ5SR56 506 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 DTHD1Q6ZMT9 781 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 MAPKAPK5Q8IW41 473 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 TBC1D16Q8TBP0 767 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 PAGE5Q96GU1 130 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 NFE2L3Q9Y4A8 694 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 SYNRGQ9UMZ2 1314 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 PLIN4Q96Q06 1357 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 ECM29Q5VYK3 1845 aa12□□□□□ -0.49
ZNF540-208ENST00000589857 ESYT2A0FGR8 921 aa11.99□□□□□ -0.49
ZNF540-208ENST00000589857 PALM3A6NDB9 673 aaPredicted RBP11.99□□□□□ -0.49
ZNF540-208ENST00000589857 YDJCA8MPS7 323 aa11.99□□□□□ -0.49
ZNF540-208ENST00000589857 RIOK3O14730 519 aaKnown RBP11.99□□□□□ -0.49
ZNF540-208ENST00000589857 ARHGAP6O43182 974 aa11.99□□□□□ -0.49
ZNF540-208ENST00000589857 CTIFO43310 598 aaKnown RBP11.99□□□□□ -0.49
ZNF540-208ENST00000589857 ZNF18P17022 549 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms