RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	CLIC6	Q96NY7	704 aa		17.57	■□□□□ 0.4
DDX39A-209	ENST00000589318	SEC63	Q9UGP8	760 aa	Known RBP	17.57	■□□□□ 0.4
DDX39A-209	ENST00000589318	ZBTB21	Q9ULJ3	1066 aa		17.57	■□□□□ 0.4
DDX39A-209	ENST00000589318		F5H6K3	240 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	CDK11B	P21127	795 aa	Known RBP	17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	SLC16A2	P36021	539 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	TNNI2	P48788	182 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	KLRC3	Q07444	240 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	KIF4B	Q2VIQ3	1234 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	PIK3AP1	Q6ZUJ8	805 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	KIAA1524	Q8TCG1	905 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	RASGRP4	Q8TDF6	673 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	TNMD	Q9H2S6	317 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	CGN	Q9P2M7	1197 aa	Known RBP	17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	FBXO2	Q9UK22	296 aa	Predicted RBP	17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	SYNPO2	Q9UMS6	1093 aa		17.56	■□□□□ 0.4
DDX39A-209	ENST00000589318	FAM237A	A0A1B0GTK4	181 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	TRIM75P	A6NK02	468 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	CUTA	O60888	179 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	PPP1R11	O60927	126 aa	Predicted RBP	17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	ADCY5	O95622	1261 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	NDUFB10	O96000	172 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	ATP2B1	P20020	1258 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	PTPRE	P23469	700 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	NAPA	P54920	295 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	MAP3K11	Q16584	847 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	GMCL1	Q96IK5	515 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	HACL1	Q9UJ83	578 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	PCDHA6	Q9UN73	950 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	HPSE	Q9Y251	543 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	PCDHA8	Q9Y5H6	950 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	MRVI1	Q9Y6F6	885 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	hCG_1984214	I3L0E3	225 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	SLC1A4	P43007	532 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	GRIN1	Q05586	938 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	TNFAIP1	Q13829	316 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	GPC2	Q8N158	579 aa		17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	ZNF713	Q8N859	430 aa	Predicted RBP	17.55	■□□□□ 0.4
DDX39A-209	ENST00000589318	PNMA6F	A0A0J9YX94	578 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	ESYT2	A0FGR8	921 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	PHF20L1	A8MW92	1017 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	USP17L10	C9JJH3	530 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	PFKFB1	P16118	471 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	CAP2	P40123	477 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	ECE1	P42892	770 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	TRAPPC10	P48553	1259 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	TTC38	Q5R3I4	469 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	RESP18	Q5W5W9	173 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	KRI1	Q8N9T8	703 aa	Known RBP	17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	ACER1	Q8TDN7	264 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	GPRC5D	Q9NZD1	345 aa		17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	17.54	■□□□□ 0.4
DDX39A-209	ENST00000589318	YBX3	P16989	372 aa	Known RBP eCLIP	17.53	■□□□□ 0.4	2e-7	■□□□□ 10
DDX39A-209	ENST00000589318	CKAP2L	Q8IYA6	745 aa		17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	TRPM4	Q8TD43	1214 aa		17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	CCDC12	Q8WUD4	166 aa	Predicted RBP	17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	COA7	Q96BR5	231 aa		17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	NUP88	Q99567	741 aa	Predicted RBP	17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	TSPYL1	Q9H0U9	437 aa		17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	CEP131	Q9UPN4	1083 aa		17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	SRPRB	Q9Y5M8	271 aa	Known RBP	17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	SMCO2	A6NFE2	343 aa		17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	RIOK3	O14730	519 aa	Known RBP	17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	KIAA1755	Q5JYT7	1200 aa		17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318	TMX2	Q9Y320	296 aa		17.53	■□□□□ 0.4
DDX39A-209	ENST00000589318		H7C1D1	291 aa		17.52	■□□□□ 0.4
DDX39A-209	ENST00000589318	ZBTB5	O15062	677 aa		17.52	■□□□□ 0.4
DDX39A-209	ENST00000589318	RAD21	O60216	631 aa		17.52	■□□□□ 0.4
DDX39A-209	ENST00000589318	KIN	O60870	393 aa	Known RBP	17.52	■□□□□ 0.4
DDX39A-209	ENST00000589318	ZNF174	Q15697	407 aa		17.52	■□□□□ 0.4
DDX39A-209	ENST00000589318	ILDR2	Q71H61	639 aa		17.52	■□□□□ 0.4
DDX39A-209	ENST00000589318	DEFB129	Q9H1M3	183 aa		17.52	■□□□□ 0.4
DDX39A-209	ENST00000589318	GNA11	P29992	359 aa		17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	ARHGEF10L	Q9HCE6	1279 aa		17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	C6orf50	Q9HD87	102 aa		17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	SPDYE4	A6NLX3	237 aa		17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	ZNF202	O95125	648 aa		17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	BMP15	O95972	392 aa		17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	BMP3	P12645	472 aa		17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	ATP2C1	P98194	919 aa	Predicted RBP	17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	ZNF579	Q8NAF0	562 aa	Known RBP	17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	TSC1	Q92574	1164 aa		17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	TTC12	Q9H892	705 aa	Predicted RBP	17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	DDX41	Q9UJV9	622 aa	Known RBP	17.51	■□□□□ 0.39
DDX39A-209	ENST00000589318	POLR2A	P24928	1970 aa	Known RBP	17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	CCDC194	A0A1B0GVG4	234 aa		17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	SMTNL1	A8MU46	457 aa		17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	CTAGE5	O15320	804 aa		17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	EPS15	P42566	896 aa		17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	HIRA	P54198	1017 aa	Predicted RBP	17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	QRICH1	Q2TAL8	776 aa		17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	SPECC1	Q5M775	1068 aa		17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	PPP1R18	Q6NYC8	613 aa		17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	BTNL9	Q6UXG8	535 aa		17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	PAXBP1	Q9Y5B6	917 aa		17.5	■□□□□ 0.39
DDX39A-209	ENST00000589318	ASNS	P08243	561 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	TYRO3	Q06418	890 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	PTGDR	Q13258	359 aa		17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	NBPF12	Q5TAG4	269 aa	Predicted RBP	17.49	■□□□□ 0.39
DDX39A-209	ENST00000589318	ANGEL2	Q5VTE6	544 aa	Known RBP	17.49	■□□□□ 0.39

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms