RNA–Protein interactions for RNA: ENST00000586119.1

LIG3-207, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-207ENST00000586119 GRIN2CQ14957 1233 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 TMEM63BQ5T3F8 832 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 CCDC129Q6ZRS4 1044 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 ANKRD35Q8N283 1001 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 NEDD1Q8NHV4 660 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.86□□□□□ -0.19
LIG3-207ENST00000586119 KATNBL1Q9H079 304 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 FEM1BQ9UK73 627 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 CTDP1Q9Y5B0 961 aaPredicted RBP13.86□□□□□ -0.19
LIG3-207ENST00000586119 CDH23Q9H251 3354 aa13.86□□□□□ -0.19
LIG3-207ENST00000586119 SOWAHBA6NEL2 793 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 FOXP2O15409 715 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 NMT2O60551 498 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 TTLL1O95922 423 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 ACRP10323 421 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 BMP3P12645 472 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 MCCP23508 829 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 CTDSPL2Q05D32 466 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 ARMCX2Q7L311 632 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 ZNF467Q7Z7K2 595 aaPredicted RBP13.85□□□□□ -0.19
LIG3-207ENST00000586119 CCDC144CPQ8IYA2 1237 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 MSL3Q8N5Y2 521 aaKnown RBP13.85□□□□□ -0.19
LIG3-207ENST00000586119 PI4K2BQ8TCG2 481 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 VTI1AQ96AJ9 217 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 TOX2Q96NM4 488 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 PURBQ96QR8 312 aaKnown RBP13.85□□□□□ -0.19
LIG3-207ENST00000586119 TBX21Q9UL17 535 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 ISY1Q9ULR0 285 aaKnown RBP13.85□□□□□ -0.19
LIG3-207ENST00000586119 ASTN1O14525 1302 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 ZNF536O15090 1300 aa13.85□□□□□ -0.19
LIG3-207ENST00000586119 MOXD2PA6NHM9 499 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 DCDC2CA8MYV0 355 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 TIMP1P01033 207 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 ZFYP08048 801 aaPredicted RBP13.84□□□□□ -0.19
LIG3-207ENST00000586119 TSPY3P0CV98 308 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 TSPY8P0CW00 308 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 GNAT2P19087 354 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 PBX2P40425 430 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 GJA9P57773 515 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 GNASQ5JWF2 1037 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.84□□□□□ -0.19
LIG3-207ENST00000586119 USP38Q8NB14 1042 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 GMCL1P1Q8NEA9 526 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 NUP133Q8WUM0 1156 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 UPF3AQ9H1J1 476 aaKnown RBP13.84□□□□□ -0.19
LIG3-207ENST00000586119 ABHD16BQ9H3Z7 469 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 MTMR7Q9Y216 660 aa13.84□□□□□ -0.19
LIG3-207ENST00000586119 ARVCFO00192 962 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 FOSL2P15408 326 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 CSF2RAP15509 400 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 CST5P28325 142 aaPredicted RBP13.83□□□□□ -0.2
LIG3-207ENST00000586119 PPARAQ07869 468 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 MUM1L1Q5H9M0 696 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 TMEM240Q5SV17 173 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 ZMYM1Q5SVZ6 1142 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 CCDC174Q6PII3 467 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 KCTD1Q719H9 257 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 FAM133AQ8N9E0 248 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 CHST13Q8NET6 341 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 GPATCH3Q96I76 525 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 GLT1D1Q96MS3 346 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 PPP1R12CQ9BZL4 782 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 A1CFQ9NQ94 594 aaKnown RBP13.83□□□□□ -0.2
LIG3-207ENST00000586119 PRDM6Q9NQX0 595 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 PDGFCQ9NRA1 345 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 IL17RBQ9NRM6 502 aa13.83□□□□□ -0.2
LIG3-207ENST00000586119 LCTP09848 1927 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.82□□□□□ -0.2
LIG3-207ENST00000586119 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.82□□□□□ -0.2
LIG3-207ENST00000586119 ALAS1P13196 640 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 CYP2C18P33260 490 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 VPS53Q5VIR6 699 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 MFSD5Q6N075 450 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 EEPD1Q7L9B9 569 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 FAM126BQ8IXS8 530 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 STAG1Q8WVM7 1258 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 TRERF1Q96PN7 1200 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 FSD1Q9BTV5 496 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 NAPBQ9H115 298 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 RNF146Q9NTX7 359 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 VCANP13611 3396 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 ELP1O95163 1332 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 UMODL1Q5DID0 1318 aa13.82□□□□□ -0.2
LIG3-207ENST00000586119 SMPD1P17405 629 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 DNAJB2P25686 324 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 SLC1A4P43007 532 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 OAZ1P54368 228 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 TNFAIP2Q03169 654 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 PDE4BQ07343 736 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 TTBK2Q6IQ55 1244 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 CXCL17Q6UXB2 119 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 ZNF365Q70YC5 407 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 NOL8Q76FK4 1167 aaKnown RBP13.81□□□□□ -0.2
LIG3-207ENST00000586119 PCSK9Q8NBP7 692 aaKnown RBP13.81□□□□□ -0.2
LIG3-207ENST00000586119 ZNF576Q9H609 170 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 ACAD9Q9H845 621 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 FBXO40Q9UH90 709 aa13.81□□□□□ -0.2
LIG3-207ENST00000586119 GNEQ9Y223 722 aaKnown RBP13.81□□□□□ -0.2
LIG3-207ENST00000586119 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.81□□□□□ -0.2
LIG3-207ENST00000586119 GRIN2DO15399 1336 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms