RNA–Protein interactions for RNA: ENST00000583780.1

SHMT1-210, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 332 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-210ENST00000583780 ZSCAN25Q6NSZ9 544 aa26.09■■□□□ 1.77
SHMT1-210ENST00000583780 MKNK2Q9HBH9 465 aa26.09■■□□□ 1.77
SHMT1-210ENST00000583780 COG6Q9Y2V7 657 aa26.09■■□□□ 1.77
SHMT1-210ENST00000583780 CD4P01730 458 aa26.08■■□□□ 1.77
SHMT1-210ENST00000583780 ARMCX2Q7L311 632 aa26.08■■□□□ 1.77
SHMT1-210ENST00000583780 VTI1AQ96AJ9 217 aa26.08■■□□□ 1.77
SHMT1-210ENST00000583780 PRDM12Q9H4Q4 367 aa26.08■■□□□ 1.77
SHMT1-210ENST00000583780 DDX19BQ9UMR2 479 aa26.08■■□□□ 1.77
SHMT1-210ENST00000583780 NCOR1O75376 2440 aa26.08■■□□□ 1.77
SHMT1-210ENST00000583780 GBF1Q92538 1859 aa26.07■■□□□ 1.76
SHMT1-210ENST00000583780 A0A0U1RQG5 324 aaPredicted RBP26.07■■□□□ 1.76
SHMT1-210ENST00000583780 MINDY4BA8MYZ0 360 aa26.07■■□□□ 1.76
SHMT1-210ENST00000583780 TNFRSF10AO00220 468 aa26.07■■□□□ 1.76
SHMT1-210ENST00000583780 MS4A1P11836 297 aa26.07■■□□□ 1.76
SHMT1-210ENST00000583780 GIMAP6Q6P9H5 292 aa26.07■■□□□ 1.76
SHMT1-210ENST00000583780 ANKRD35Q8N283 1001 aa26.07■■□□□ 1.76
SHMT1-210ENST00000583780 TMEM199Q8N511 208 aa26.07■■□□□ 1.76
SHMT1-210ENST00000583780 KIFC2Q96AC6 838 aa26.07■■□□□ 1.76
SHMT1-210ENST00000583780 PPP1R12CQ9BZL4 782 aa26.07■■□□□ 1.76
SHMT1-210ENST00000583780 ADGRE1Q14246 886 aa26.06■■□□□ 1.76
SHMT1-210ENST00000583780 AKNAD1Q5T1N1 836 aa26.06■■□□□ 1.76
SHMT1-210ENST00000583780 CCDC129Q6ZRS4 1044 aa26.06■■□□□ 1.76
SHMT1-210ENST00000583780 CCDC144CPQ8IYA2 1237 aa26.06■■□□□ 1.76
SHMT1-210ENST00000583780 CHST13Q8NET6 341 aa26.06■■□□□ 1.76
SHMT1-210ENST00000583780 PPM1EQ8WY54 764 aa26.06■■□□□ 1.76
SHMT1-210ENST00000583780 OSBP2Q969R2 916 aa26.06■■□□□ 1.76
SHMT1-210ENST00000583780 SPC25Q9HBM1 224 aa26.06■■□□□ 1.76
SHMT1-210ENST00000583780 SMARCA5O60264 1052 aaPredicted RBP26.05■■□□□ 1.76
SHMT1-210ENST00000583780 CYP2C18P33260 490 aa26.05■■□□□ 1.76
SHMT1-210ENST00000583780 CNTN2Q02246 1040 aa26.05■■□□□ 1.76
SHMT1-210ENST00000583780 SLC43A3Q8NBI5 491 aa26.05■■□□□ 1.76
SHMT1-210ENST00000583780 MTMR4Q9NYA4 1195 aa26.05■■□□□ 1.76
SHMT1-210ENST00000583780 CXXC1Q9P0U4 656 aaPredicted RBP26.05■■□□□ 1.76
SHMT1-210ENST00000583780 FBXO40Q9UH90 709 aa26.05■■□□□ 1.76
SHMT1-210ENST00000583780 FEM1BQ9UK73 627 aa26.05■■□□□ 1.76
SHMT1-210ENST00000583780 ASTN1O14525 1302 aa26.05■■□□□ 1.76
SHMT1-210ENST00000583780 C11orf97A0A1B0GVM6 126 aaPredicted RBP26.04■■□□□ 1.76
SHMT1-210ENST00000583780 OAZ1P54368 228 aa26.04■■□□□ 1.76
SHMT1-210ENST00000583780 BEX3Q00994 111 aa26.04■■□□□ 1.76
SHMT1-210ENST00000583780 CCDC174Q6PII3 467 aa26.04■■□□□ 1.76
SHMT1-210ENST00000583780 FAM133AQ8N9E0 248 aa26.04■■□□□ 1.76
SHMT1-210ENST00000583780 ATXN2LQ8WWM7 1075 aaKnown RBP26.04■■□□□ 1.76
SHMT1-210ENST00000583780 HERVK_113Q902F9 699 aa26.04■■□□□ 1.76
SHMT1-210ENST00000583780 CEP95Q96GE4 821 aa26.04■■□□□ 1.76
SHMT1-210ENST00000583780 GAS2L1Q99501 681 aaPredicted RBP26.04■■□□□ 1.76
SHMT1-210ENST00000583780 EPB41L4AQ9HCS5 686 aaPredicted RBP26.04■■□□□ 1.76
SHMT1-210ENST00000583780 IL23AQ9NPF7 189 aa26.04■■□□□ 1.76
SHMT1-210ENST00000583780 PSRC1Q6PGN9 363 aaPredicted RBP26.03■■□□□ 1.76
SHMT1-210ENST00000583780 ZNF444Q8N0Y2 327 aaPredicted RBP26.03■■□□□ 1.76
SHMT1-210ENST00000583780 GNEQ9Y223 722 aaKnown RBP26.03■■□□□ 1.76
SHMT1-210ENST00000583780 CTDP1Q9Y5B0 961 aaPredicted RBP26.03■■□□□ 1.76
SHMT1-210ENST00000583780 GRIN2DO15399 1336 aa26.03■■□□□ 1.76
SHMT1-210ENST00000583780 SOWAHBA6NEL2 793 aa26.02■■□□□ 1.76
SHMT1-210ENST00000583780 TLR3O15455 904 aaKnown RBP26.02■■□□□ 1.76
SHMT1-210ENST00000583780 PRDM1O75626 825 aa26.02■■□□□ 1.76
SHMT1-210ENST00000583780 KBTBD3Q8NAB2 608 aa26.02■■□□□ 1.76
SHMT1-210ENST00000583780 GMCL1P1Q8NEA9 526 aa26.02■■□□□ 1.76
SHMT1-210ENST00000583780 LRRCC1Q9C099 1032 aa26.02■■□□□ 1.76
SHMT1-210ENST00000583780 CHD7Q9P2D1 2997 aa26.01■■□□□ 1.76
SHMT1-210ENST00000583780 ZNF536O15090 1300 aa26.01■■□□□ 1.75
SHMT1-210ENST00000583780 COL9A1P20849 921 aa26.01■■□□□ 1.75
SHMT1-210ENST00000583780 TNFAIP2Q03169 654 aa26.01■■□□□ 1.75
SHMT1-210ENST00000583780 UMODL1Q5DID0 1318 aa26.01■■□□□ 1.75
SHMT1-210ENST00000583780 CXCL17Q6UXB2 119 aa26.01■■□□□ 1.75
SHMT1-210ENST00000583780 ASB2Q96Q27 587 aa26.01■■□□□ 1.75
SHMT1-210ENST00000583780 SYNPO2Q9UMS6 1093 aa26.01■■□□□ 1.75
SHMT1-210ENST00000583780 FGBP02675 491 aa26■■□□□ 1.75
SHMT1-210ENST00000583780 PTGS1P23219 599 aa26■■□□□ 1.75
SHMT1-210ENST00000583780 SLFN13Q68D06 897 aa26■■□□□ 1.75
SHMT1-210ENST00000583780 LRRC47Q8N1G4 583 aaKnown RBP26■■□□□ 1.75
SHMT1-210ENST00000583780 APPBP2Q92624 585 aa26■■□□□ 1.75
SHMT1-210ENST00000583780 VWCEQ96DN2 955 aa26■■□□□ 1.75
SHMT1-210ENST00000583780 HOMER2Q9NSB8 354 aa26■■□□□ 1.75
SHMT1-210ENST00000583780 ECHDC1Q9NTX5 307 aa26■■□□□ 1.75
SHMT1-210ENST00000583780 YBX2Q9Y2T7 364 aaKnown RBP26■■□□□ 1.75
SHMT1-210ENST00000583780 RNF113AO15541 343 aaKnown RBP25.99■■□□□ 1.75
SHMT1-210ENST00000583780 TTLL1O95922 423 aa25.99■■□□□ 1.75
SHMT1-210ENST00000583780 BMP3P12645 472 aa25.99■■□□□ 1.75
SHMT1-210ENST00000583780 CCDC85BQ15834 202 aaPredicted RBP25.99■■□□□ 1.75
SHMT1-210ENST00000583780 NEDD1Q8NHV4 660 aa25.99■■□□□ 1.75
SHMT1-210ENST00000583780 AGBL1Q96MI9 1066 aa25.99■■□□□ 1.75
SHMT1-210ENST00000583780 NKX2-4Q9H2Z4 354 aa25.99■■□□□ 1.75
SHMT1-210ENST00000583780 A1CFQ9NQ94 594 aaKnown RBP25.99■■□□□ 1.75
SHMT1-210ENST00000583780 MSRAQ9UJ68 235 aa25.99■■□□□ 1.75
SHMT1-210ENST00000583780 DDX49Q9Y6V7 483 aaKnown RBP25.99■■□□□ 1.75
SHMT1-210ENST00000583780 GPAA1O43292 621 aa25.98■■□□□ 1.75
SHMT1-210ENST00000583780 FDX1P10109 184 aa25.98■■□□□ 1.75
SHMT1-210ENST00000583780 ITGA7Q13683 1181 aa25.98■■□□□ 1.75
SHMT1-210ENST00000583780 RAB30Q15771 203 aa25.98■■□□□ 1.75
SHMT1-210ENST00000583780 TMEM63BQ5T3F8 832 aa25.98■■□□□ 1.75
SHMT1-210ENST00000583780 THEGQ9P2T0 379 aa25.98■■□□□ 1.75
SHMT1-210ENST00000583780 TCF20Q9UGU0 1960 aaKnown RBP25.97■■□□□ 1.75
SHMT1-210ENST00000583780 PATL2C9JE40 543 aaKnown RBP25.97■■□□□ 1.75
SHMT1-210ENST00000583780 TMEM232C9JQI7 657 aa25.97■■□□□ 1.75
SHMT1-210ENST00000583780 M0R2C6 588 aa25.97■■□□□ 1.75
SHMT1-210ENST00000583780 SMPD1P17405 629 aa25.97■■□□□ 1.75
SHMT1-210ENST00000583780 IFNL3Q8IZI9 196 aa25.97■■□□□ 1.75
SHMT1-210ENST00000583780 HIPK3Q9H422 1215 aa25.97■■□□□ 1.75
SHMT1-210ENST00000583780 ACAD9Q9H845 621 aa25.97■■□□□ 1.75
SHMT1-210ENST00000583780 PDGFCQ9NRA1 345 aa25.97■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms