RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 SARSP49591 514 aaKnown RBP6.15□□□□□ -1.42
SMCHD1-209ENST00000583441 ZPBP2Q6X784 338 aa6.15□□□□□ -1.42
SMCHD1-209ENST00000583441 EAF1Q96JC9 268 aaPredicted RBP6.15□□□□□ -1.42
SMCHD1-209ENST00000583441 KREMEN1Q96MU8 473 aa6.15□□□□□ -1.42
SMCHD1-209ENST00000583441 SRCIN1Q9C0H9 1055 aa6.15□□□□□ -1.42
SMCHD1-209ENST00000583441 ZNF536O15090 1300 aa6.15□□□□□ -1.43
SMCHD1-209ENST00000583441 ATF2P15336 505 aa6.14□□□□□ -1.43
SMCHD1-209ENST00000583441 DLX2Q07687 328 aaPredicted RBP6.14□□□□□ -1.43
SMCHD1-209ENST00000583441 NMIQ13287 307 aaPredicted RBP6.14□□□□□ -1.43
SMCHD1-209ENST00000583441 FAM13CQ8NE31 585 aa6.14□□□□□ -1.43
SMCHD1-209ENST00000583441 ANKRD24Q8TF21 1146 aa6.14□□□□□ -1.43
SMCHD1-209ENST00000583441 TCTN2Q96GX1 697 aa6.14□□□□□ -1.43
SMCHD1-209ENST00000583441 FRMD6Q96NE9 622 aa6.14□□□□□ -1.43
SMCHD1-209ENST00000583441 GPR55Q9Y2T6 319 aaPredicted RBP6.14□□□□□ -1.43
SMCHD1-209ENST00000583441 PNMA6FA0A0J9YX94 578 aa6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 UNCXA6NJT0 531 aa6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 YARSP54577 528 aaKnown RBP6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 XPCQ01831 940 aaPredicted RBP6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 MVKQ03426 396 aa6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 FHL2Q14192 279 aa6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 ZNF761Q86XN6 746 aaPredicted RBP6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 DAGLBQ8NCG7 672 aa6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 FCRL2Q96LA5 508 aaPredicted RBP6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 HDAC8Q9BY41 377 aa6.13□□□□□ -1.43
SMCHD1-209ENST00000583441 UPK3BL1B0FP48 263 aa6.12□□□□□ -1.43
SMCHD1-209ENST00000583441 UPK3BL2E5RIL1 263 aa6.12□□□□□ -1.43
SMCHD1-209ENST00000583441 SYPP08247 313 aa6.12□□□□□ -1.43
SMCHD1-209ENST00000583441 TTBK2Q6IQ55 1244 aa6.12□□□□□ -1.43
SMCHD1-209ENST00000583441 LINC00116Q8NCU8 138 aa6.12□□□□□ -1.43
SMCHD1-209ENST00000583441 MRS2Q9HD23 443 aa6.12□□□□□ -1.43
SMCHD1-209ENST00000583441 NTMQ9P121 344 aa6.12□□□□□ -1.43
SMCHD1-209ENST00000583441 ACSL6Q9UKU0 697 aa6.12□□□□□ -1.43
SMCHD1-209ENST00000583441 LTBP3Q9NS15 1303 aa6.11□□□□□ -1.43
SMCHD1-209ENST00000583441 SEPT6Q14141 434 aa6.11□□□□□ -1.43
SMCHD1-209ENST00000583441 TMC4Q7Z404 712 aa6.11□□□□□ -1.43
SMCHD1-209ENST00000583441 LIMS2Q7Z4I7 341 aa6.11□□□□□ -1.43
SMCHD1-209ENST00000583441 ZNF655Q8N720 491 aaPredicted RBP6.11□□□□□ -1.43
SMCHD1-209ENST00000583441 SSBP3Q9BWW4 388 aaPredicted RBP6.11□□□□□ -1.43
SMCHD1-209ENST00000583441 KLC2Q9H0B6 622 aa6.11□□□□□ -1.43
SMCHD1-209ENST00000583441 KIAA1522Q9P206 1035 aaPredicted RBP6.11□□□□□ -1.43
SMCHD1-209ENST00000583441 SPG7Q9UQ90 795 aa6.11□□□□□ -1.43
SMCHD1-209ENST00000583441 GIPC1O14908 333 aa6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 GNA15P30679 374 aa6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 CHMP4BP1P59074 171 aa6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 PURAQ00577 322 aaKnown RBP6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 PSMD2Q13200 908 aa6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 LGI4Q8N135 537 aa6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 SETDB2Q96T68 719 aa6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 DUSP9Q99956 384 aaKnown RBP6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 RNF38Q9H0F5 515 aa6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 PARP2Q9UGN5 583 aa6.1□□□□□ -1.43
SMCHD1-209ENST00000583441 WDR33Q9C0J8 1336 aaKnown RBP6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 A0A1W2PQ45 241 aaPredicted RBP6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 A0A1W2PQY0 241 aa6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 SORBS3O60504 671 aa6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 NCAM1P13591 858 aa6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 ATXN1P54253 815 aaKnown RBP6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 DAB2P98082 770 aa6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 MRPL58Q14197 206 aaKnown RBP6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 BBS9Q3SYG4 887 aa6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 TTLL7Q6ZT98 887 aa6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 SV2BQ7L1I2 683 aa6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 SLCO6A1Q86UG4 719 aa6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 INVSQ9Y283 1065 aa6.09□□□□□ -1.43
SMCHD1-209ENST00000583441 A0A1W2PQ27 194 aa6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 A0A1W2PQ64 194 aa6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 A0A1W2PQC6 194 aa6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 A0A1W2PQD8 194 aa6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 PLCG1P19174 1290 aa6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 TAGLNQ01995 201 aaKnown RBP6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 KIAA2012Q0VF49 1180 aa6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 ZNF341Q9BYN7 854 aa6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 IMPACTQ9P2X3 320 aa6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 PCDHB5Q9Y5E4 795 aa6.08□□□□□ -1.44
SMCHD1-209ENST00000583441 TCF3P15923 654 aa6.07□□□□□ -1.44
SMCHD1-209ENST00000583441 PALM2Q8IXS6 379 aa6.07□□□□□ -1.44
SMCHD1-209ENST00000583441 ADAMTS17Q8TE56 1095 aa6.07□□□□□ -1.44
SMCHD1-209ENST00000583441 CHFRQ96EP1 664 aa6.07□□□□□ -1.44
SMCHD1-209ENST00000583441 VTI1BQ9UEU0 232 aa6.07□□□□□ -1.44
SMCHD1-209ENST00000583441 WWC3Q9ULE0 1092 aa6.07□□□□□ -1.44
SMCHD1-209ENST00000583441 RECKO95980 971 aa6.06□□□□□ -1.44
SMCHD1-209ENST00000583441 ICAM4Q14773 271 aa6.06□□□□□ -1.44
SMCHD1-209ENST00000583441 PAQR3Q6TCH7 311 aa6.06□□□□□ -1.44
SMCHD1-209ENST00000583441 CCDC74BQ96LY2 380 aa6.06□□□□□ -1.44
SMCHD1-209ENST00000583441 OSBPL7Q9BZF2 842 aa6.06□□□□□ -1.44
SMCHD1-209ENST00000583441 DEF6Q9H4E7 631 aa6.06□□□□□ -1.44
SMCHD1-209ENST00000583441 IGSF5Q9NSI5 407 aa6.06□□□□□ -1.44
SMCHD1-209ENST00000583441 PLA2G2DQ9UNK4 145 aa6.06□□□□□ -1.44
SMCHD1-209ENST00000583441 HCFC2Q9Y5Z7 792 aa6.06□□□□□ -1.44
SMCHD1-209ENST00000583441 SCAMP3O14828 347 aaKnown RBP6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 CYBBP04839 570 aa6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 ENDOUP21128 410 aaKnown RBP6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 EIF4BP23588 611 aaKnown RBP6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 LMO1P25800 156 aa6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 MC3RP41968 323 aa6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 RPS26P62854 115 aaKnown RBP6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 TSNAXIP1Q2TAA8 658 aa6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 BORAQ6PGQ7 559 aa6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 FAM124AQ86V42 546 aa6.05□□□□□ -1.44
SMCHD1-209ENST00000583441 SLFN12Q8IYM2 578 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms