RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 PLXNA1Q9UIW2 1896 aa24.22■■□□□ 1.47
SHMT1-209ENST00000582653 FGRP09769 529 aa24.22■■□□□ 1.47
SHMT1-209ENST00000582653 SDSP20132 328 aa24.22■■□□□ 1.47
SHMT1-209ENST00000582653 SLC1A4P43007 532 aa24.22■■□□□ 1.47
SHMT1-209ENST00000582653 TRIM60Q495X7 471 aa24.22■■□□□ 1.47
SHMT1-209ENST00000582653 RRP12Q5JTH9 1297 aaKnown RBP24.22■■□□□ 1.47
SHMT1-209ENST00000582653 RASGRP2Q7LDG7 609 aa24.22■■□□□ 1.47
SHMT1-209ENST00000582653 DEFB123Q8N688 67 aa24.22■■□□□ 1.47
SHMT1-209ENST00000582653 TSEN34Q9BSV6 310 aaKnown RBP24.22■■□□□ 1.47
SHMT1-209ENST00000582653 OSBPL3Q9H4L5 887 aa24.22■■□□□ 1.47
SHMT1-209ENST00000582653 MTMR7Q9Y216 660 aa24.22■■□□□ 1.47
SHMT1-209ENST00000582653 ORC4O43929 436 aa24.21■■□□□ 1.47
SHMT1-209ENST00000582653 ADAMTS4O75173 837 aa24.21■■□□□ 1.47
SHMT1-209ENST00000582653 HAND2P61296 217 aa24.21■■□□□ 1.47
SHMT1-209ENST00000582653 RCSD1Q6JBY9 416 aa24.21■■□□□ 1.47
SHMT1-209ENST00000582653 KCTD1Q719H9 257 aa24.21■■□□□ 1.47
SHMT1-209ENST00000582653 CCDC171Q6TFL3 1326 aa24.2■■□□□ 1.46
SHMT1-209ENST00000582653 NOVP48745 357 aa24.2■■□□□ 1.46
SHMT1-209ENST00000582653 TLE2Q04725 743 aa24.2■■□□□ 1.46
SHMT1-209ENST00000582653 IKQ13123 557 aaPredicted RBP24.2■■□□□ 1.46
SHMT1-209ENST00000582653 ACVR2BQ13705 512 aa24.2■■□□□ 1.46
SHMT1-209ENST00000582653 KLHDC9Q8NEP7 349 aa24.2■■□□□ 1.46
SHMT1-209ENST00000582653 ABHD16BQ9H3Z7 469 aa24.2■■□□□ 1.46
SHMT1-209ENST00000582653 DUSP11O75319 330 aaKnown RBP24.19■■□□□ 1.46
SHMT1-209ENST00000582653 SNAP25P60880 206 aa24.19■■□□□ 1.46
SHMT1-209ENST00000582653 PRDM5Q9NQX1 630 aaPredicted RBP24.19■■□□□ 1.46
SHMT1-209ENST00000582653 PDLIM7Q9NR12 457 aa24.19■■□□□ 1.46
SHMT1-209ENST00000582653 HOMER2Q9NSB8 354 aa24.19■■□□□ 1.46
SHMT1-209ENST00000582653 ZNF536O15090 1300 aa24.18■■□□□ 1.46
SHMT1-209ENST00000582653 A0A1W2PQ45 241 aaPredicted RBP24.18■■□□□ 1.46
SHMT1-209ENST00000582653 A0A1W2PQY0 241 aa24.18■■□□□ 1.46
SHMT1-209ENST00000582653 TRIM43BA6NCK2 446 aa24.18■■□□□ 1.46
SHMT1-209ENST00000582653 Q7L0L9 218 aa24.18■■□□□ 1.46
SHMT1-209ENST00000582653 SH3RF1Q7Z6J0 888 aa24.18■■□□□ 1.46
SHMT1-209ENST00000582653 BADQ92934 168 aa24.18■■□□□ 1.46
SHMT1-209ENST00000582653 TRIM43Q96BQ3 446 aaPredicted RBP24.18■■□□□ 1.46
SHMT1-209ENST00000582653 FGD4Q96M96 766 aa24.18■■□□□ 1.46
SHMT1-209ENST00000582653 AGBL1Q96MI9 1066 aa24.18■■□□□ 1.46
SHMT1-209ENST00000582653 MTMR10Q9NXD2 777 aa24.18■■□□□ 1.46
SHMT1-209ENST00000582653 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.18■■□□□ 1.46
SHMT1-209ENST00000582653 ZHX1Q9UKY1 873 aaPredicted RBP24.18■■□□□ 1.46
SHMT1-209ENST00000582653 POTEB2H3BUK9 544 aa24.17■■□□□ 1.46
SHMT1-209ENST00000582653 ACLYP53396 1101 aa24.17■■□□□ 1.46
SHMT1-209ENST00000582653 IRX6P78412 446 aaPredicted RBP24.17■■□□□ 1.46
SHMT1-209ENST00000582653 TKFCQ3LXA3 575 aa24.17■■□□□ 1.46
SHMT1-209ENST00000582653 CCSAPQ6IQ19 270 aaPredicted RBP24.17■■□□□ 1.46
SHMT1-209ENST00000582653 CWC27Q6UX04 472 aaKnown RBP24.17■■□□□ 1.46
SHMT1-209ENST00000582653 NUP133Q8WUM0 1156 aa24.17■■□□□ 1.46
SHMT1-209ENST00000582653 LENG1Q96BZ8 264 aaPredicted RBP24.17■■□□□ 1.46
SHMT1-209ENST00000582653 ACAD9Q9H845 621 aa24.17■■□□□ 1.46
SHMT1-209ENST00000582653 SYNRGQ9UMZ2 1314 aa24.16■■□□□ 1.46
SHMT1-209ENST00000582653 MOXD2PA6NHM9 499 aa24.16■■□□□ 1.46
SHMT1-209ENST00000582653 KCNA10Q16322 511 aa24.16■■□□□ 1.46
SHMT1-209ENST00000582653 FAM133AQ8N9E0 248 aa24.16■■□□□ 1.46
SHMT1-209ENST00000582653 TRERF1Q96PN7 1200 aa24.16■■□□□ 1.46
SHMT1-209ENST00000582653 ZMYM6O95789 1325 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 COL6A3P12111 3177 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 CNTN2Q02246 1040 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 SHHQ15465 462 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 CCDC144BQ3MJ40 725 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 FAM109BQ6ICB4 259 aaPredicted RBP24.15■■□□□ 1.46
SHMT1-209ENST00000582653 CCDC174Q6PII3 467 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 ARMCX2Q7L311 632 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 TBC1D10CQ8IV04 446 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 CCDC144CPQ8IYA2 1237 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 TOX2Q96NM4 488 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 TMEM47Q9BQJ4 181 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 TCP11L1Q9NUJ3 509 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 PRR12Q9ULL5 1215 aa24.15■■□□□ 1.46
SHMT1-209ENST00000582653 CLTBP09497 229 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 MFAP1P55081 439 aaKnown RBP24.14■■□□□ 1.45
SHMT1-209ENST00000582653 CCDC96Q2M329 555 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 AKNAD1Q5T1N1 836 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 TTBK2Q6IQ55 1244 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 MFSD6Q6ZSS7 791 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 ANKRD33Q7Z3H0 272 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 SLC17A8Q8NDX2 589 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 KATNBL1Q9H079 304 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 SPC25Q9HBM1 224 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 A1CFQ9NQ94 594 aaKnown RBP24.14■■□□□ 1.45
SHMT1-209ENST00000582653 STARD7Q9NQZ5 370 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 DIAPH3Q9NSV4 1193 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 RNF146Q9NTX7 359 aa24.14■■□□□ 1.45
SHMT1-209ENST00000582653 KIAA0355O15063 1070 aa24.13■■□□□ 1.45
SHMT1-209ENST00000582653 TOP1P11387 765 aaKnown RBP24.13■■□□□ 1.45
SHMT1-209ENST00000582653 ALAS1P13196 640 aa24.13■■□□□ 1.45
SHMT1-209ENST00000582653 PDE4AP27815 886 aa24.13■■□□□ 1.45
SHMT1-209ENST00000582653 CST5P28325 142 aaPredicted RBP24.13■■□□□ 1.45
SHMT1-209ENST00000582653 SLC16A2P36021 539 aa24.13■■□□□ 1.45
SHMT1-209ENST00000582653 GJA9P57773 515 aa24.13■■□□□ 1.45
SHMT1-209ENST00000582653 PCSK9Q8NBP7 692 aaKnown RBP24.13■■□□□ 1.45
SHMT1-209ENST00000582653 DCAF4Q8WV16 495 aa24.13■■□□□ 1.45
SHMT1-209ENST00000582653 STXBP5LQ9Y2K9 1186 aa24.13■■□□□ 1.45
SHMT1-209ENST00000582653 ELP1O95163 1332 aa24.12■■□□□ 1.45
SHMT1-209ENST00000582653 SOWAHBA6NEL2 793 aa24.12■■□□□ 1.45
SHMT1-209ENST00000582653 ASB14A6NK59 587 aa24.12■■□□□ 1.45
SHMT1-209ENST00000582653 ADCY6O43306 1168 aa24.12■■□□□ 1.45
SHMT1-209ENST00000582653 ITGB8P26012 769 aa24.12■■□□□ 1.45
SHMT1-209ENST00000582653 BTNL9Q6UXG8 535 aa24.12■■□□□ 1.45
SHMT1-209ENST00000582653 GLT1D1Q96MS3 346 aa24.12■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms