RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 CCDC163A0A0D9SF12 145 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 J3QL48 77 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 PDE2AO00408 941 aaPredicted RBP7.34□□□□□ -1.23
VPS53-219ENST00000576019 ACRP10323 421 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 SOX18P35713 384 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 CDK8P49336 464 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 KCNQ4P56696 695 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 PLAURQ03405 335 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 FOXC1Q12948 553 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 LRRC14Q15048 493 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 FNDC3BQ53EP0 1204 aaKnown RBP7.34□□□□□ -1.23
VPS53-219ENST00000576019 YOD1Q5VVQ6 348 aaPredicted RBP7.34□□□□□ -1.23
VPS53-219ENST00000576019 MPRIPQ6WCQ1 1025 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 UNC5AQ6ZN44 842 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 LYSMD3Q7Z3D4 306 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 KISS1RQ969F8 398 aaPredicted RBP7.34□□□□□ -1.23
VPS53-219ENST00000576019 YIPF4Q9BSR8 244 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 CDH19Q9H159 772 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 CRISPLD1Q9H336 500 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 SLC5A4Q9NY91 659 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 PKD2L1Q9P0L9 805 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 RNF181Q9P0P0 153 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 SLC12A7Q9Y666 1083 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 LMO7Q8WWI1 1683 aa7.34□□□□□ -1.23
VPS53-219ENST00000576019 DNAJC25-GNG10A0A024R161 153 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 IFRD1O00458 451 aaPredicted RBP7.33□□□□□ -1.24
VPS53-219ENST00000576019 PRPF3O43395 683 aaKnown RBP7.33□□□□□ -1.24
VPS53-219ENST00000576019 HTR3BO95264 441 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 CPEP16870 476 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 ATP11AP98196 1134 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 MLC1Q15049 377 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 DEFB115Q30KQ5 88 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 LRRFIP1Q32MZ4 808 aaKnown RBP7.33□□□□□ -1.24
VPS53-219ENST00000576019 LONRF3Q496Y0 759 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 WDR44Q5JSH3 913 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 C10orf62Q5T681 223 aaPredicted RBP7.33□□□□□ -1.24
VPS53-219ENST00000576019 SAMD5Q5TGI4 173 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 OVOS1Q6IE37 1185 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 DDX46Q7L014 1031 aaKnown RBP7.33□□□□□ -1.24
VPS53-219ENST00000576019 NECAB2Q7Z6G3 386 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 ZBTB46Q86UZ6 589 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 COL23A1Q86Y22 540 aaPredicted RBP7.33□□□□□ -1.24
VPS53-219ENST00000576019 LINC00528Q8N1L1 170 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 WDR66Q8TBY9 1149 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 DHRS4Q9BTZ2 278 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 RASSF4Q9H2L5 321 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 CLEC4MQ9H2X3 399 aaPredicted RBP7.33□□□□□ -1.24
VPS53-219ENST00000576019 ARHGEF4Q9NR80 690 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 BTAF1O14981 1849 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 WNK3Q9BYP7 1800 aa7.33□□□□□ -1.24
VPS53-219ENST00000576019 GLTPD2A6NH11 291 aa7.32□□□□□ -1.24
VPS53-219ENST00000576019 CA12O43570 354 aa7.32□□□□□ -1.24
VPS53-219ENST00000576019 FOSP01100 380 aaPredicted RBP7.32□□□□□ -1.24
VPS53-219ENST00000576019 CDC27P30260 824 aa7.32□□□□□ -1.24
VPS53-219ENST00000576019 RAB44Q7Z6P3 723 aaPredicted RBP7.32□□□□□ -1.24
VPS53-219ENST00000576019 PNISRQ8TF01 805 aaKnown RBP7.32□□□□□ -1.24
VPS53-219ENST00000576019 KLHL6Q8WZ60 621 aa7.32□□□□□ -1.24
VPS53-219ENST00000576019 EPN3Q9H201 632 aa7.32□□□□□ -1.24
VPS53-219ENST00000576019 PHAXQ9H814 394 aaKnown RBP7.32□□□□□ -1.24
VPS53-219ENST00000576019 CORINQ9Y5Q5 1042 aa7.32□□□□□ -1.24
VPS53-219ENST00000576019 LAMB4A4D0S4 1761 aa7.32□□□□□ -1.24
VPS53-219ENST00000576019 SBF1O95248 1867 aa7.32□□□□□ -1.24
VPS53-219ENST00000576019 ARFGEF1Q9Y6D6 1849 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 ERBB4Q15303 1308 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 SYNGAP1Q96PV0 1343 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 RGPD8O14715 1765 aaPredicted RBP7.31□□□□□ -1.24
VPS53-219ENST00000576019 DCDC2BA2VCK2 349 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 ARNTP27540 789 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 BRCA1P38398 1863 aaKnown RBP7.31□□□□□ -1.24
VPS53-219ENST00000576019 PCDH1Q08174 1060 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 HLTFQ14527 1009 aaKnown RBP eCLIP7.31□□□□□ -1.24
VPS53-219ENST00000576019 SV2CQ496J9 727 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 PKN3Q6P5Z2 889 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 ADAMTSL4Q6UY14 1074 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 TAB3Q8N5C8 712 aaPredicted RBP7.31□□□□□ -1.24
VPS53-219ENST00000576019 SNIP1Q8TAD8 396 aaKnown RBP7.31□□□□□ -1.24
VPS53-219ENST00000576019 ZNF180Q9UJW8 692 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 LAMA3Q16787 3333 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 KIF13BQ9NQT8 1826 aa7.31□□□□□ -1.24
VPS53-219ENST00000576019 PIEZO1Q92508 2521 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 TRBV23-1A0A0A0MS06 115 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 A0A1W2PQU0 124 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 B3GALT4O96024 378 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 ARAFP10398 606 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 STAT4Q14765 748 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 ZRSR2Q15696 482 aaKnown RBP7.3□□□□□ -1.24
VPS53-219ENST00000576019 FAM102BQ5T8I3 360 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 MAP1SQ66K74 1059 aaPredicted RBP7.3□□□□□ -1.24
VPS53-219ENST00000576019 DHX32Q7L7V1 743 aaKnown RBP7.3□□□□□ -1.24
VPS53-219ENST00000576019 TEX2Q8IWB9 1127 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 TCEAL8Q8IYN2 117 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 PPM1KQ8N3J5 372 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 DDX1Q92499 740 aaKnown RBP7.3□□□□□ -1.24
VPS53-219ENST00000576019 CHMP4CQ96CF2 233 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 IPO9Q96P70 1041 aaKnown RBP7.3□□□□□ -1.24
VPS53-219ENST00000576019 SLC9A7Q96T83 725 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 PBX4Q9BYU1 374 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 TRIM8Q9BZR9 551 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 ENAMQ9NRM1 1142 aa7.3□□□□□ -1.24
VPS53-219ENST00000576019 INTS7Q9NVH2 962 aaKnown RBP7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 120.3 ms