RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 AURKAO14965 403 aa7.3□□□□□ -1.24
NUP88-208ENST00000574087 KCNH1O95259 989 aa7.3□□□□□ -1.24
NUP88-208ENST00000574087 CD3EP07766 207 aa7.3□□□□□ -1.24
NUP88-208ENST00000574087 ENDOUP21128 410 aaKnown RBP7.3□□□□□ -1.24
NUP88-208ENST00000574087 GDNFP39905 211 aa7.3□□□□□ -1.24
NUP88-208ENST00000574087 AMPD2Q01433 879 aa7.3□□□□□ -1.24
NUP88-208ENST00000574087 PPP1R14AQ96A00 147 aa7.3□□□□□ -1.24
NUP88-208ENST00000574087 SGSM3Q96HU1 749 aa7.3□□□□□ -1.24
NUP88-208ENST00000574087 DEPDC7Q96QD5 511 aa7.3□□□□□ -1.24
NUP88-208ENST00000574087 RC3H2Q9HBD1 1191 aaKnown RBP7.3□□□□□ -1.24
NUP88-208ENST00000574087 CTNND2Q9UQB3 1225 aa7.3□□□□□ -1.24
NUP88-208ENST00000574087 A0A1W2PQU0 124 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 TBX1O43435 398 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 GSTM1P09488 218 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 IFNGR1P15260 489 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 CEBPAP49715 358 aaPredicted RBP7.29□□□□□ -1.24
NUP88-208ENST00000574087 CCDC144BQ3MJ40 725 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 SPATC1Q76KD6 591 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 SYTL4Q96C24 671 aaPredicted RBP7.29□□□□□ -1.24
NUP88-208ENST00000574087 FCRL2Q96LA5 508 aaPredicted RBP7.29□□□□□ -1.24
NUP88-208ENST00000574087 SRPK1Q96SB4 655 aaKnown RBP7.29□□□□□ -1.24
NUP88-208ENST00000574087 SP110Q9HB58 689 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 ERVK13-1Q9NX77 482 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 LRP2BPQ9P2M1 347 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 ZMYM5Q9UJ78 669 aa7.29□□□□□ -1.24
NUP88-208ENST00000574087 GPR55Q9Y2T6 319 aaPredicted RBP7.29□□□□□ -1.24
NUP88-208ENST00000574087 AGRPO00253 132 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 FGF10O15520 208 aaPredicted RBP7.28□□□□□ -1.24
NUP88-208ENST00000574087 DUSP4Q13115 394 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 DPY19L1Q2PZI1 675 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 GTF2IRD2BQ6EKJ0 949 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 DPH6Q7L8W6 267 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 GTF2IRD2Q86UP8 949 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 TMEM52Q8NDY8 209 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 PDZD8Q8NEN9 1154 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 FLAD1Q8NFF5 587 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 BTN2A2Q8WVV5 523 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 MAP6Q96JE9 813 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 CDADC1Q9BWV3 514 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 NKX2-4Q9H2Z4 354 aa7.28□□□□□ -1.24
NUP88-208ENST00000574087 CDK11AQ9UQ88 783 aaPredicted RBP7.28□□□□□ -1.24
NUP88-208ENST00000574087 IQCA1LA6NCM1 817 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 STXBP3O00186 592 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 HPXP02790 462 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 HK2P52789 917 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 PPP2R2AP63151 447 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 CYP4F3Q08477 520 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 NFE2L2Q16236 605 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 MTERF2Q49AM1 385 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 RCSD1Q6JBY9 416 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 ATG4DQ86TL0 474 aaPredicted RBP7.27□□□□□ -1.25
NUP88-208ENST00000574087 COPS5Q92905 334 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 HHIPL1Q96JK4 782 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 CYP26B1Q9NR63 512 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 TNFRSF10DQ9UBN6 386 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 BACE2Q9Y5Z0 518 aa7.27□□□□□ -1.25
NUP88-208ENST00000574087 C2orf71A6NGG8 1288 aa7.26□□□□□ -1.25
NUP88-208ENST00000574087 KIR2DL1P43626 348 aaPredicted RBP7.26□□□□□ -1.25
NUP88-208ENST00000574087 KIR2DL2P43627 348 aaPredicted RBP7.26□□□□□ -1.25
NUP88-208ENST00000574087 ERVFC1P60507 584 aa7.26□□□□□ -1.25
NUP88-208ENST00000574087 BMS1Q14692 1282 aaKnown RBP7.26□□□□□ -1.25
NUP88-208ENST00000574087 NR0B2Q15466 257 aa7.26□□□□□ -1.25
NUP88-208ENST00000574087 EEF1DP3Q658K8 133 aa7.26□□□□□ -1.25
NUP88-208ENST00000574087 ANKS4BQ8N8V4 417 aa7.26□□□□□ -1.25
NUP88-208ENST00000574087 ZSWIM4Q9H7M6 989 aa7.26□□□□□ -1.25
NUP88-208ENST00000574087 LOC100996750A0A140TA64 210 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 FADS2P1A8MWK0 482 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 DIAPH1O60610 1272 aaKnown RBP7.25□□□□□ -1.25
NUP88-208ENST00000574087 HOXC12P31275 282 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 GRIA2P42262 883 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 CHRNEQ04844 493 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 SCRN1Q12765 414 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 IFRD2Q12894 506 aaPredicted RBP7.25□□□□□ -1.25
NUP88-208ENST00000574087 SPPL2CQ8IUH8 684 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 LRRC47Q8N1G4 583 aaKnown RBP7.25□□□□□ -1.25
NUP88-208ENST00000574087 OXR1Q8N573 874 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 PTCHD1Q96NR3 888 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 DNAJC7Q99615 494 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 SPATA9Q9BWV2 254 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 KRTAP4-6Q9BYQ5 205 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 PIF1Q9H611 641 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 ARHGEF4Q9NR80 690 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 PFDN2Q9UHV9 154 aa7.25□□□□□ -1.25
NUP88-208ENST00000574087 FITM1A5D6W6 292 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 NOTOA8MTQ0 251 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 ADCY3O60266 1144 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 IGSF3O75054 1194 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 USP2O75604 605 aaPredicted RBP7.24□□□□□ -1.25
NUP88-208ENST00000574087 SCG5P05408 212 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 ITGB5P18084 799 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 AFMP43652 599 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 HSP90AA2PQ14568 343 aaPredicted RBP7.24□□□□□ -1.25
NUP88-208ENST00000574087 SF1Q15637 639 aaKnown RBP7.24□□□□□ -1.25
NUP88-208ENST00000574087 XP32Q5T750 250 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 CYP2R1Q6VVX0 501 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 CCDC140Q96MF4 163 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 KDM2BQ8NHM5 1336 aa7.24□□□□□ -1.25
NUP88-208ENST00000574087 SEPHS1P49903 392 aa7.23□□□□□ -1.25
NUP88-208ENST00000574087 IRAK1P51617 712 aa7.23□□□□□ -1.25
NUP88-208ENST00000574087 GFRA1P56159 465 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms