RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 MYADML2A6NDP7 307 aa25.05■■□□□ 1.6
VPS53-216ENST00000574029 ADCY6O43306 1168 aa25.05■■□□□ 1.6
VPS53-216ENST00000574029 GMCL1Q96IK5 515 aa25.05■■□□□ 1.6
VPS53-216ENST00000574029 CDX2Q99626 313 aaPredicted RBP25.05■■□□□ 1.6
VPS53-216ENST00000574029 LAMA2P24043 3122 aaKnown RBP25.04■■□□□ 1.6
VPS53-216ENST00000574029 DCDC2CA8MYV0 355 aa25.04■■□□□ 1.6
VPS53-216ENST00000574029 TMEM232C9JQI7 657 aa25.04■■□□□ 1.6
VPS53-216ENST00000574029 CCDC144BQ3MJ40 725 aa25.04■■□□□ 1.6
VPS53-216ENST00000574029 ARMCX2Q7L311 632 aa25.04■■□□□ 1.6
VPS53-216ENST00000574029 UPF3AQ9H1J1 476 aaKnown RBP25.04■■□□□ 1.6
VPS53-216ENST00000574029 ELP1O95163 1332 aa25.04■■□□□ 1.6
VPS53-216ENST00000574029 STAT2P52630 851 aa25.03■■□□□ 1.6
VPS53-216ENST00000574029 GJA9P57773 515 aa25.03■■□□□ 1.6
VPS53-216ENST00000574029 IRX5P78411 483 aaPredicted RBP25.03■■□□□ 1.6
VPS53-216ENST00000574029 FPGSQ05932 587 aa25.03■■□□□ 1.6
VPS53-216ENST00000574029 FAM160B2Q86V87 743 aa25.03■■□□□ 1.6
VPS53-216ENST00000574029 PHF6Q8IWS0 365 aaKnown RBP eCLIP25.03■■□□□ 1.6
VPS53-216ENST00000574029 CCDC144CPQ8IYA2 1237 aa25.03■■□□□ 1.6
VPS53-216ENST00000574029 PCSK9Q8NBP7 692 aaKnown RBP25.03■■□□□ 1.6
VPS53-216ENST00000574029 STAG1Q8WVM7 1258 aa25.03■■□□□ 1.6
VPS53-216ENST00000574029 RNPC3Q96LT9 517 aaKnown RBP25.03■■□□□ 1.6
VPS53-216ENST00000574029 KATNBL1Q9H079 304 aa25.03■■□□□ 1.6
VPS53-216ENST00000574029 TTYH1Q9H313 450 aaPredicted RBP25.03■■□□□ 1.6
VPS53-216ENST00000574029 ZNF536O15090 1300 aa25.03■■□□□ 1.6
VPS53-216ENST00000574029 FOXP2O15409 715 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 PLA2G6O60733 806 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 C6orf222P0C671 652 aaPredicted RBP25.02■■□□□ 1.6
VPS53-216ENST00000574029 MX1P20591 662 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 CDK7P50613 346 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 PPP4R3BQ5MIZ7 849 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 FAM133AQ8N9E0 248 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 CHURC1Q8WUH1 139 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 GLT1D1Q96MS3 346 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 ACAD9Q9H845 621 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 HOMER2Q9NSB8 354 aa25.02■■□□□ 1.6
VPS53-216ENST00000574029 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.02■■□□□ 1.6
VPS53-216ENST00000574029 ASGR1P07306 291 aa25.01■■□□□ 1.59
VPS53-216ENST00000574029 SLC1A4P43007 532 aa25.01■■□□□ 1.59
VPS53-216ENST00000574029 NKX3-2P78367 333 aa25.01■■□□□ 1.59
VPS53-216ENST00000574029 CNTN2Q02246 1040 aa25.01■■□□□ 1.59
VPS53-216ENST00000574029 SPC25Q9HBM1 224 aa25.01■■□□□ 1.59
VPS53-216ENST00000574029 TBX21Q9UL17 535 aa25.01■■□□□ 1.59
VPS53-216ENST00000574029 MROH7Q68CQ1 1323 aa25.01■■□□□ 1.59
VPS53-216ENST00000574029 SALL3Q9BXA9 1300 aa25.01■■□□□ 1.59
VPS53-216ENST00000574029 TIMP1P01033 207 aa25■■□□□ 1.59
VPS53-216ENST00000574029 MCCP23508 829 aa25■■□□□ 1.59
VPS53-216ENST00000574029 TKFCQ3LXA3 575 aa25■■□□□ 1.59
VPS53-216ENST00000574029 AGBL1Q96MI9 1066 aa25■■□□□ 1.59
VPS53-216ENST00000574029 A1CFQ9NQ94 594 aaKnown RBP25■■□□□ 1.59
VPS53-216ENST00000574029 IL17RBQ9NRM6 502 aa25■■□□□ 1.59
VPS53-216ENST00000574029 RNF146Q9NTX7 359 aa25■■□□□ 1.59
VPS53-216ENST00000574029 TMEM265A0A087WTH1 108 aa24.99■■□□□ 1.59
VPS53-216ENST00000574029 LRRC37A2A6NM11 1700 aa24.99■■□□□ 1.59
VPS53-216ENST00000574029 CTAGE5O15320 804 aa24.99■■□□□ 1.59
VPS53-216ENST00000574029 RCSD1Q6JBY9 416 aa24.99■■□□□ 1.59
VPS53-216ENST00000574029 CCDC129Q6ZRS4 1044 aa24.99■■□□□ 1.59
VPS53-216ENST00000574029 CUL9Q8IWT3 2517 aa24.99■■□□□ 1.59
VPS53-216ENST00000574029 ISY1Q9ULR0 285 aaKnown RBP24.99■■□□□ 1.59
VPS53-216ENST00000574029 STX8Q9UNK0 236 aa24.99■■□□□ 1.59
VPS53-216ENST00000574029 A0A0C4DFX4 3053 aa24.99■■□□□ 1.59
VPS53-216ENST00000574029 SOWAHBA6NEL2 793 aa24.98■■□□□ 1.59
VPS53-216ENST00000574029 TSPY2A6NKD2 308 aa24.98■■□□□ 1.59
VPS53-216ENST00000574029 CTDSPL2Q05D32 466 aa24.98■■□□□ 1.59
VPS53-216ENST00000574029 IKQ13123 557 aaPredicted RBP24.98■■□□□ 1.59
VPS53-216ENST00000574029 GNASQ5JWF2 1037 aa24.98■■□□□ 1.59
VPS53-216ENST00000574029 TRERF1Q96PN7 1200 aa24.98■■□□□ 1.59
VPS53-216ENST00000574029 COL25A1Q9BXS0 654 aaPredicted RBP24.98■■□□□ 1.59
VPS53-216ENST00000574029 INCENPQ9NQS7 918 aa24.98■■□□□ 1.59
VPS53-216ENST00000574029 ANAPC4Q9UJX5 808 aa24.98■■□□□ 1.59
VPS53-216ENST00000574029 A0A0U1RQG5 324 aaPredicted RBP24.97■■□□□ 1.59
VPS53-216ENST00000574029 ARVCFO00192 962 aa24.97■■□□□ 1.59
VPS53-216ENST00000574029 NOVP48745 357 aa24.97■■□□□ 1.59
VPS53-216ENST00000574029 MFSD5Q6N075 450 aa24.97■■□□□ 1.59
VPS53-216ENST00000574029 KCTD1Q719H9 257 aa24.97■■□□□ 1.59
VPS53-216ENST00000574029 MYLIPQ8WY64 445 aa24.97■■□□□ 1.59
VPS53-216ENST00000574029 C11orf97A0A1B0GVM6 126 aaPredicted RBP24.96■■□□□ 1.59
VPS53-216ENST00000574029 ASB14A6NK59 587 aa24.96■■□□□ 1.59
VPS53-216ENST00000574029 NMT2O60551 498 aa24.96■■□□□ 1.59
VPS53-216ENST00000574029 TNFAIP2Q03169 654 aa24.96■■□□□ 1.59
VPS53-216ENST00000574029 MAFAQ8NHW3 353 aaPredicted RBP24.96■■□□□ 1.59
VPS53-216ENST00000574029 VTI1AQ96AJ9 217 aa24.96■■□□□ 1.59
VPS53-216ENST00000574029 CHMP4CQ96CF2 233 aa24.96■■□□□ 1.59
VPS53-216ENST00000574029 PRR12Q9ULL5 1215 aa24.96■■□□□ 1.59
VPS53-216ENST00000574029 UNC80Q8N2C7 3258 aa24.96■■□□□ 1.59
VPS53-216ENST00000574029 ASTN1O14525 1302 aa24.95■■□□□ 1.58
VPS53-216ENST00000574029 HSFX4A0A1B0GTS1 333 aaPredicted RBP24.95■■□□□ 1.58
VPS53-216ENST00000574029 HSFX3A0A1B0GWH4 333 aaPredicted RBP24.95■■□□□ 1.58
VPS53-216ENST00000574029 ALAS1P13196 640 aa24.95■■□□□ 1.58
VPS53-216ENST00000574029 VPS53Q5VIR6 699 aa24.95■■□□□ 1.58
VPS53-216ENST00000574029 FAM126BQ8IXS8 530 aa24.95■■□□□ 1.58
VPS53-216ENST00000574029 GNEQ9Y223 722 aaKnown RBP24.95■■□□□ 1.58
VPS53-216ENST00000574029 LCTP09848 1927 aa24.94■■□□□ 1.58
VPS53-216ENST00000574029 FGRP09769 529 aa24.94■■□□□ 1.58
VPS53-216ENST00000574029 CCDC174Q6PII3 467 aa24.94■■□□□ 1.58
VPS53-216ENST00000574029 RASGRP2Q7LDG7 609 aa24.94■■□□□ 1.58
VPS53-216ENST00000574029 EVI5LQ96CN4 794 aa24.94■■□□□ 1.58
VPS53-216ENST00000574029 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.94■■□□□ 1.585e-7■■□□□ 14.2
VPS53-216ENST00000574029 ORC4O43929 436 aa24.93■■□□□ 1.58
VPS53-216ENST00000574029 SNAP25P60880 206 aa24.93■■□□□ 1.58
VPS53-216ENST00000574029 BEX3Q00994 111 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms