RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 RASIP1Q5U651 963 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 ARMCX2Q7L311 632 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 ZNF467Q7Z7K2 595 aaPredicted RBP22.95■■□□□ 1.26
NUP88-203ENST00000572019 FAM126BQ8IXS8 530 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 CHMP4CQ96CF2 233 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 PBX4Q9BYU1 374 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 PPP1R12CQ9BZL4 782 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 MKNK2Q9HBH9 465 aa22.95■■□□□ 1.26
NUP88-203ENST00000572019 BEX3Q00994 111 aa22.94■■□□□ 1.26
NUP88-203ENST00000572019 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.94■■□□□ 1.26
NUP88-203ENST00000572019 CCDC144CPQ8IYA2 1237 aa22.94■■□□□ 1.26
NUP88-203ENST00000572019 GLT1D1Q96MS3 346 aa22.94■■□□□ 1.26
NUP88-203ENST00000572019 LRRCC1Q9C099 1032 aa22.94■■□□□ 1.26
NUP88-203ENST00000572019 HOMER2Q9NSB8 354 aa22.94■■□□□ 1.26
NUP88-203ENST00000572019 ELP1O95163 1332 aa22.93■■□□□ 1.26
NUP88-203ENST00000572019 UMODL1Q5DID0 1318 aa22.93■■□□□ 1.26
NUP88-203ENST00000572019 GJA9P57773 515 aa22.93■■□□□ 1.26
NUP88-203ENST00000572019 ZSCAN25Q6NSZ9 544 aa22.93■■□□□ 1.26
NUP88-203ENST00000572019 ARVCFO00192 962 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 ZBED4O75132 1171 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 CYP2C18P33260 490 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 GNASQ5JWF2 1037 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 TMEM63BQ5T3F8 832 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 ZNF365Q70YC5 407 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 RASGRP2Q7LDG7 609 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 ANKRD35Q8N283 1001 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 KBTBD3Q8NAB2 608 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 PPM1EQ8WY54 764 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 APPBP2Q92624 585 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 MKL1Q969V6 931 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 VTI1AQ96AJ9 217 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 ABHD16BQ9H3Z7 469 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 PRDM12Q9H4Q4 367 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 ECHDC1Q9NTX5 307 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 MTMR4Q9NYA4 1195 aa22.92■■□□□ 1.26
NUP88-203ENST00000572019 CXXC1Q9P0U4 656 aaPredicted RBP22.92■■□□□ 1.26
NUP88-203ENST00000572019 GPAA1O43292 621 aa22.91■■□□□ 1.26
NUP88-203ENST00000572019 MS4A1P11836 297 aa22.91■■□□□ 1.26
NUP88-203ENST00000572019 ADGRE1Q14246 886 aa22.91■■□□□ 1.26
NUP88-203ENST00000572019 CHD7Q9P2D1 2997 aa22.91■■□□□ 1.26
NUP88-203ENST00000572019 ZNF536O15090 1300 aa22.9■■□□□ 1.26
NUP88-203ENST00000572019 A0A0U1RQG5 324 aaPredicted RBP22.9■■□□□ 1.26
NUP88-203ENST00000572019 SOWAHBA6NEL2 793 aa22.9■■□□□ 1.26
NUP88-203ENST00000572019 CD4P01730 458 aa22.9■■□□□ 1.26
NUP88-203ENST00000572019 PPIGQ13427 754 aaKnown RBP eCLIP22.9■■□□□ 1.26
NUP88-203ENST00000572019 GIMAP6Q6P9H5 292 aa22.9■■□□□ 1.26
NUP88-203ENST00000572019 FAM133AQ8N9E0 248 aa22.9■■□□□ 1.26
NUP88-203ENST00000572019 PCSK9Q8NBP7 692 aaKnown RBP22.9■■□□□ 1.26
NUP88-203ENST00000572019 SEC62Q99442 399 aaKnown RBP22.9■■□□□ 1.26
NUP88-203ENST00000572019 FEM1BQ9UK73 627 aa22.9■■□□□ 1.26
NUP88-203ENST00000572019 GRIN2DO15399 1336 aa22.89■■□□□ 1.26
NUP88-203ENST00000572019 MROH7Q68CQ1 1323 aa22.89■■□□□ 1.26
NUP88-203ENST00000572019 RNF113AO15541 343 aaKnown RBP22.89■■□□□ 1.25
NUP88-203ENST00000572019 SNAP25P60880 206 aa22.89■■□□□ 1.25
NUP88-203ENST00000572019 TJAP1Q5JTD0 557 aa22.89■■□□□ 1.25
NUP88-203ENST00000572019 SLFN13Q68D06 897 aa22.89■■□□□ 1.25
NUP88-203ENST00000572019 CXCL17Q6UXB2 119 aa22.89■■□□□ 1.25
NUP88-203ENST00000572019 CCDC129Q6ZRS4 1044 aa22.89■■□□□ 1.25
NUP88-203ENST00000572019 CHST13Q8NET6 341 aa22.89■■□□□ 1.25
NUP88-203ENST00000572019 AGBL1Q96MI9 1066 aa22.89■■□□□ 1.25
NUP88-203ENST00000572019 REV3LO60673 3130 aa22.89■■□□□ 1.25
NUP88-203ENST00000572019 SCN5AQ14524 2016 aa22.88■■□□□ 1.25
NUP88-203ENST00000572019 TDO2P48775 406 aa22.88■■□□□ 1.25
NUP88-203ENST00000572019 NKX3-2P78367 333 aa22.88■■□□□ 1.25
NUP88-203ENST00000572019 GMCL1P1Q8NEA9 526 aa22.88■■□□□ 1.25
NUP88-203ENST00000572019 PURBQ96QR8 312 aaKnown RBP22.88■■□□□ 1.25
NUP88-203ENST00000572019 A1CFQ9NQ94 594 aaKnown RBP22.88■■□□□ 1.25
NUP88-203ENST00000572019 GNEQ9Y223 722 aaKnown RBP22.88■■□□□ 1.25
NUP88-203ENST00000572019 CTDP1Q9Y5B0 961 aaPredicted RBP22.88■■□□□ 1.25
NUP88-203ENST00000572019 TCF20Q9UGU0 1960 aaKnown RBP22.88■■□□□ 1.25
NUP88-203ENST00000572019 PLIN4Q96Q06 1357 aa22.88■■□□□ 1.25
NUP88-203ENST00000572019 TMEM232C9JQI7 657 aa22.87■■□□□ 1.25
NUP88-203ENST00000572019 TTLL1O95922 423 aa22.87■■□□□ 1.25
NUP88-203ENST00000572019 BMP3P12645 472 aa22.87■■□□□ 1.25
NUP88-203ENST00000572019 IFNL3Q8IZI9 196 aa22.87■■□□□ 1.25
NUP88-203ENST00000572019 ZNF444Q8N0Y2 327 aaPredicted RBP22.87■■□□□ 1.25
NUP88-203ENST00000572019 VWCEQ96DN2 955 aa22.87■■□□□ 1.25
NUP88-203ENST00000572019 PDGFCQ9NRA1 345 aa22.87■■□□□ 1.25
NUP88-203ENST00000572019 YBX2Q9Y2T7 364 aaKnown RBP22.87■■□□□ 1.25
NUP88-203ENST00000572019 APPP05067 770 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 OAZ1P54368 228 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 TMEM199Q8N511 208 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 SLC43A3Q8NBI5 491 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 NEDD1Q8NHV4 660 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 SYMPKQ92797 1274 aaKnown RBP22.86■■□□□ 1.25
NUP88-203ENST00000572019 SPC25Q9HBM1 224 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 INCENPQ9NQS7 918 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 RNF146Q9NTX7 359 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 FBXO40Q9UH90 709 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 RAPGEFL1Q9UHV5 662 aa22.86■■□□□ 1.25
NUP88-203ENST00000572019 NCOR1O75376 2440 aa22.85■■□□□ 1.25
NUP88-203ENST00000572019 SMPD1P17405 629 aa22.85■■□□□ 1.25
NUP88-203ENST00000572019 PSMC6P62333 389 aa22.85■■□□□ 1.25
NUP88-203ENST00000572019 TNFAIP2Q03169 654 aa22.85■■□□□ 1.25
NUP88-203ENST00000572019 CCDC85BQ15834 202 aaPredicted RBP22.85■■□□□ 1.25
NUP88-203ENST00000572019 MUM1L1Q5H9M0 696 aa22.85■■□□□ 1.25
NUP88-203ENST00000572019 TRPV6Q9H1D0 765 aa22.85■■□□□ 1.25
NUP88-203ENST00000572019 NKX2-4Q9H2Z4 354 aa22.85■■□□□ 1.25
NUP88-203ENST00000572019 ACAD9Q9H845 621 aa22.85■■□□□ 1.25
NUP88-203ENST00000572019 IL23AQ9NPF7 189 aa22.85■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms