RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 PDLIM7Q9NR12 457 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 FLRT1Q9NZU1 646 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 THEGQ9P2T0 379 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 ABCF2Q9UG63 623 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 HERC5Q9UII4 1024 aaKnown RBP7.23□□□□□ -1.25
VPS53-208ENST00000570650 RLFQ13129 1914 aa7.23□□□□□ -1.25
VPS53-208ENST00000570650 LAMA2P24043 3122 aaKnown RBP7.23□□□□□ -1.25
VPS53-208ENST00000570650 MUC3AQ02505 3323 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.22□□□□□ -1.25
VPS53-208ENST00000570650 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.22□□□□□ -1.25
VPS53-208ENST00000570650 TRIM43BA6NCK2 446 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 SLC15A5A6NIM6 579 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 USP17L10C9JJH3 530 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 LILRA1O75019 489 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 HOXC6P09630 235 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 RFX5P48382 616 aaPredicted RBP7.22□□□□□ -1.25
VPS53-208ENST00000570650 CCNA1P78396 465 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 ATP2B2Q01814 1243 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 GJC2Q5T442 439 aaPredicted RBP7.22□□□□□ -1.25
VPS53-208ENST00000570650 Q6ZVU0 165 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 ERICH6Q7L0X2 663 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 ATG9AQ7Z3C6 839 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 WDR63Q8IWG1 891 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 LINC00528Q8N1L1 170 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 TRIM43Q96BQ3 446 aaPredicted RBP7.22□□□□□ -1.25
VPS53-208ENST00000570650 UHRF1Q96T88 793 aaPredicted RBP7.22□□□□□ -1.25
VPS53-208ENST00000570650 GAS2L1Q99501 681 aaPredicted RBP7.22□□□□□ -1.25
VPS53-208ENST00000570650 CEP126Q9P2H0 1117 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 PI4KBQ9UBF8 816 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 RABGAP1Q9Y3P9 1069 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 CDH23Q9H251 3354 aa7.22□□□□□ -1.25
VPS53-208ENST00000570650 PDS5AQ29RF7 1337 aaKnown RBP7.22□□□□□ -1.25
VPS53-208ENST00000570650 CIAO1O76071 339 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 LDHCP07864 332 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 CYBAP13498 195 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 CYP2C19P33261 490 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 ADD1P35611 737 aaKnown RBP7.21□□□□□ -1.26
VPS53-208ENST00000570650 MCCD1P59942 119 aaPredicted RBP7.21□□□□□ -1.26
VPS53-208ENST00000570650 MRPS5P82675 430 aaKnown RBP7.21□□□□□ -1.26
VPS53-208ENST00000570650 MECOMQ03112 1051 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 RASGRF1Q13972 1273 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 AKNAD1Q5T1N1 836 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 WDR78Q5VTH9 848 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 C1orf53Q5VUE5 145 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 CCDC102BQ68D86 513 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 TRPV1Q8NER1 839 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 NPLOC4Q8TAT6 608 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 PPM1EQ8WY54 764 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 KIFC2Q96AC6 838 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 TIFAQ96CG3 184 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 AGBL1Q96MI9 1066 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 C1QTNF1Q9BXJ1 281 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 SIL1Q9H173 461 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 CYLDQ9NQC7 956 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 GINM1Q9NU53 330 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 TACC3Q9Y6A5 838 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 IVNS1ABPQ9Y6Y0 642 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 SYNGAP1Q96PV0 1343 aa7.21□□□□□ -1.26
VPS53-208ENST00000570650 CNMDO75829 334 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 CLTBP09497 229 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 RAG1P15918 1043 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 ITGB8P26012 769 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 ADORA1P30542 326 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 ADCYAP1R1P41586 468 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 EPHB4P54760 987 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 GSTO1P78417 241 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 TLE2Q04725 743 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 GRB14Q14449 540 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 ANO1Q5XXA6 986 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 USP17L2Q6R6M4 530 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 ZNF775Q96BV0 537 aaPredicted RBP7.2□□□□□ -1.26
VPS53-208ENST00000570650 USP44Q9H0E7 712 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 DHX36Q9H2U1 1008 aaKnown RBP7.2□□□□□ -1.26
VPS53-208ENST00000570650 ZBTB21Q9ULJ3 1066 aa7.2□□□□□ -1.26
VPS53-208ENST00000570650 MYO9BQ13459 2157 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 SOBPA7XYQ1 873 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 USP17L15C9J2P7 530 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 USP17L13C9JLJ4 530 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 USP17L11C9JVI0 530 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 USP17L18D6R9N7 530 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 USP17L22D6RA61 530 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 USP17L17D6RBQ6 530 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 USP17L19D6RCP7 530 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 USP17L20D6RJB6 530 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 KIAA0355O15063 1070 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 SEPT4O43236 478 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 IGHA2P01877 340 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 BMP2P12643 396 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 IL15P40933 162 aaPredicted RBP7.19□□□□□ -1.26
VPS53-208ENST00000570650 JAG1P78504 1218 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 FPGSQ05932 587 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 USP17L24Q0WX57 530 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 LRRC41Q15345 812 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 OLFML2BQ68BL8 750 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 LBX2Q6XYB7 198 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 FOXP4Q8IVH2 680 aaPredicted RBP7.19□□□□□ -1.26
VPS53-208ENST00000570650 TEX11Q8IYF3 940 aa7.19□□□□□ -1.26
VPS53-208ENST00000570650 CRACR2BQ8N4Y2 399 aaPredicted RBP7.19□□□□□ -1.26
VPS53-208ENST00000570650 KDF1Q8NAX2 398 aaPredicted RBP7.19□□□□□ -1.26
VPS53-208ENST00000570650 ZNF384Q8TF68 577 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms