RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 TCP10L2B9ZVM9 353 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 PPIP5K2O43314 1243 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 NEMFO60524 1076 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 RAD17O75943 681 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 USH1GQ495M9 461 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 CCAR2Q8N163 923 aaKnown RBP11.22□□□□□ -0.61
VPS53-206ENST00000570359 RGS22Q8NE09 1264 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 DESI2Q9BSY9 194 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 TCP11L1Q9NUJ3 509 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.22□□□□□ -0.61
VPS53-206ENST00000570359 KLRG2A4D1S0 409 aaPredicted RBP11.22□□□□□ -0.61
VPS53-206ENST00000570359 TTLL1O95922 423 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 ZYXQ15942 572 aaKnown RBP11.22□□□□□ -0.61
VPS53-206ENST00000570359 E4F1Q66K89 784 aaPredicted RBP11.22□□□□□ -0.61
VPS53-206ENST00000570359 ZNF772Q68DY9 489 aaPredicted RBP11.22□□□□□ -0.61
VPS53-206ENST00000570359 PDXDC2PQ6P474 469 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 SYT10Q6XYQ8 523 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 ADGRF4Q8IZF3 695 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 CCDC150Q8NCX0 1101 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 LRRC15Q8TF66 581 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 TAB2Q9NYJ8 693 aa11.22□□□□□ -0.61
VPS53-206ENST00000570359 POTEMA6NI47 508 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 NRDCO43847 1150 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 RPN1P04843 607 aaKnown RBP11.21□□□□□ -0.61
VPS53-206ENST00000570359 PLCG1P19174 1290 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 SEPT2Q15019 361 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 E2F4Q16254 413 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 VSTM4Q8IW00 320 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 C4orf32Q8N8J7 132 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 ANKS1AQ92625 1134 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 FAM163AQ96GL9 167 aaPredicted RBP11.21□□□□□ -0.61
VPS53-206ENST00000570359 DNAJC18Q9H819 358 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 DISC1Q9NRI5 854 aa11.21□□□□□ -0.61
VPS53-206ENST00000570359 COL11A2P13942 1736 aaPredicted RBP11.21□□□□□ -0.61
VPS53-206ENST00000570359 SSBP05455 408 aaKnown RBP eCLIP11.21□□□□□ -0.62
VPS53-206ENST00000570359 ADCY7P51828 1080 aa11.21□□□□□ -0.62
VPS53-206ENST00000570359 MTERF4Q7Z6M4 381 aaKnown RBP11.21□□□□□ -0.62
VPS53-206ENST00000570359 DEFB132Q7Z7B7 95 aa11.21□□□□□ -0.62
VPS53-206ENST00000570359 NEK8Q86SG6 692 aa11.21□□□□□ -0.62
VPS53-206ENST00000570359 CCDC112Q8NEF3 446 aa11.21□□□□□ -0.62
VPS53-206ENST00000570359 NELFBQ8WX92 580 aa11.21□□□□□ -0.62
VPS53-206ENST00000570359 PRIMPOLQ96LW4 560 aa11.21□□□□□ -0.62
VPS53-206ENST00000570359 SPZ1Q9BXG8 430 aa11.21□□□□□ -0.62
VPS53-206ENST00000570359 ZBTB12Q9Y330 459 aaPredicted RBP11.21□□□□□ -0.62
VPS53-206ENST00000570359 MYH8P13535 1937 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L15C9J2P7 530 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L13C9JLJ4 530 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L11C9JVI0 530 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L18D6R9N7 530 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L22D6RA61 530 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L17D6RBQ6 530 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L19D6RCP7 530 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L20D6RJB6 530 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 PLSCR1O15162 318 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 SLC37A4O43826 429 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 PPP1R11O60927 126 aaPredicted RBP11.2□□□□□ -0.62
VPS53-206ENST00000570359 OR52Z1P0C646 297 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 GNA11P29992 359 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 TRAPPC10P48553 1259 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L24Q0WX57 530 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 MTF1Q14872 753 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 USP17L6PQ6QN14 398 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 DYMQ7RTS9 669 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 CABP7Q86V35 215 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 ENOX1Q8TC92 643 aaKnown RBP11.2□□□□□ -0.62
VPS53-206ENST00000570359 PPP1R13BQ96KQ4 1090 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 SH3GLB2Q9NR46 395 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 IMPACTQ9P2X3 320 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 SLX4Q8IY92 1834 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 PPP1R3GB7ZBB8 358 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 M0R2N6 131 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 EEF2P13639 858 aaKnown RBP11.2□□□□□ -0.62
VPS53-206ENST00000570359 LONP1P36776 959 aaKnown RBP11.2□□□□□ -0.62
VPS53-206ENST00000570359 CERKLQ49MI3 558 aaPredicted RBP11.2□□□□□ -0.62
VPS53-206ENST00000570359 NT5DC1Q5TFE4 455 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 TMC4Q7Z404 712 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 CCDC12Q8WUD4 166 aaPredicted RBP11.2□□□□□ -0.62
VPS53-206ENST00000570359 ZMYND12Q9H0C1 365 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 JMJD4Q9H9V9 463 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 VEZTQ9HBM0 779 aa11.2□□□□□ -0.62
VPS53-206ENST00000570359 DYNC1I1O14576 645 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 PRCPP42785 496 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 SLC1A4P43007 532 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 ASIC1P78348 528 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 GABPAQ06546 454 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 RAD51AP2Q09MP3 1159 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 KRT25Q7Z3Z0 450 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 SH3RF1Q7Z6J0 888 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 CERS3Q8IU89 383 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 SMAP1Q8IYB5 467 aaPredicted RBP11.19□□□□□ -0.62
VPS53-206ENST00000570359 ZFP91Q96JP5 570 aaPredicted RBP11.19□□□□□ -0.62
VPS53-206ENST00000570359 ZNF277Q9NRM2 450 aaPredicted RBP11.19□□□□□ -0.62
VPS53-206ENST00000570359 SCN9AQ15858 1988 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 GTPBP6O43824 516 aaPredicted RBP11.19□□□□□ -0.62
VPS53-206ENST00000570359 CALCRLQ16602 461 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 KMT5BQ4FZB7 885 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 NAALADL2Q58DX5 795 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 SH3BP5LQ7L8J4 393 aa11.19□□□□□ -0.62
VPS53-206ENST00000570359 CCDC84Q86UT8 332 aaPredicted RBP11.19□□□□□ -0.62
VPS53-206ENST00000570359 GSDMAQ96QA5 445 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms