RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 GSTTP1A0A1W2PQM5 241 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 A6NNZ2 444 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 KCNK3O14649 394 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 PLEKHA8P1O95397 391 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 FOXO4P98177 505 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 TUBB8Q3ZCM7 444 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 CCDC152Q4G0S7 254 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 MB21D1Q8N884 522 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 TBC1D31Q96DN5 1066 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 ZSCAN10Q96SZ4 725 aaPredicted RBP12.65□□□□□ -0.38
CLN3-238ENST00000569430 MLXIPQ9HAP2 919 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 AATFQ9NY61 560 aaKnown RBP eCLIP12.65□□□□□ -0.38
CLN3-238ENST00000569430 SMARCAL1Q9NZC9 954 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 FTCDO95954 541 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 TNNI2P48788 182 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 EPHB4P54760 987 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 PDIA6Q15084 440 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 ZNF658Q5TYW1 1059 aaPredicted RBP12.65□□□□□ -0.38
CLN3-238ENST00000569430 UHMK1Q8TAS1 419 aaKnown RBP12.65□□□□□ -0.38
CLN3-238ENST00000569430 A0A1B0GUA9 196 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 EIF4A3P38919 411 aaKnown RBP12.65□□□□□ -0.38
CLN3-238ENST00000569430 CORO7P57737 925 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 ACTN3Q08043 901 aaPredicted RBP12.65□□□□□ -0.38
CLN3-238ENST00000569430 ADAT2Q7Z6V5 191 aaKnown RBP12.65□□□□□ -0.38
CLN3-238ENST00000569430 HPSEQ9Y251 543 aa12.65□□□□□ -0.38
CLN3-238ENST00000569430 SOS2Q07890 1332 aaPredicted RBP12.65□□□□□ -0.39
CLN3-238ENST00000569430 BAZ2BQ9UIF8 2168 aaKnown RBP12.65□□□□□ -0.39
CLN3-238ENST00000569430 PXDNLA1KZ92 1463 aa12.65□□□□□ -0.39
CLN3-238ENST00000569430 RABL6Q3YEC7 729 aaPredicted RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 KRT79Q5XKE5 535 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 CNNM4Q6P4Q7 775 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 CCDC84Q86UT8 332 aaPredicted RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 HNRNPLLQ8WVV9 542 aaKnown RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 CTNNBL1Q8WYA6 563 aaPredicted RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 PAIP2Q9BPZ3 127 aaKnown RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 RNF26Q9BY78 433 aaPredicted RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 DIP2AQ14689 1571 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 NCK2O43639 380 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 NEBLO76041 1014 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 TECP42680 631 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 IRAK1P51617 712 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 KLHL30Q0D2K2 578 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 RPS6KA1Q15418 735 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 PPP1R7Q15435 360 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 IFI16Q16666 785 aaKnown RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 NFRKBQ6P4R8 1299 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 PACS2Q86VP3 889 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 TACO1Q9BSH4 297 aaKnown RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 LRRC1Q9BTT6 524 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 INTS13Q9NVM9 706 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 SETD1AO15047 1707 aaKnown RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 ARID4AP29374 1257 aaPredicted RBP12.64□□□□□ -0.39
CLN3-238ENST00000569430 KIFC2Q96AC6 838 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 DPH5Q9H2P9 285 aa12.64□□□□□ -0.39
CLN3-238ENST00000569430 NIP7Q9Y221 180 aaKnown RBP eCLIP12.64□□□□□ -0.39
CLN3-238ENST00000569430 TMEM110-MUSTN1A8MSY1 372 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 SCG2P13521 617 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 CD44P16070 742 aaKnown RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 SSR1P43307 286 aaKnown RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 UBE4AQ14139 1066 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 DCAF17Q5H9S7 520 aaPredicted RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 BLIDQ8IZY5 108 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 LRRC45Q96CN5 670 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 HPCAL4Q9UM19 191 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 BACH1O14867 736 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 PDE8AO60658 829 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 CLTAP09496 248 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 CTSWP56202 376 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 ERVK-24P63145 666 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 ZBED6P86452 979 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 SF3B2Q13435 895 aaKnown RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 NAA35Q5VZE5 725 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 CCDC155Q8N6L0 562 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 ZBTB38Q8NAP3 1195 aaPredicted RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 NCAPGQ9BPX3 1015 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 SAMD15Q9P1V8 674 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 ODF2LQ9ULJ1 636 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 PXDNQ92626 1479 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 MPHOSPH10O00566 681 aaKnown RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 BUB1BO60566 1050 aaPredicted RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 NR1D1P20393 614 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 BMP6P22004 513 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 EEF1GP26641 437 aaKnown RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 GNAQP50148 359 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 GUCY1A3Q02108 690 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 RUFY4Q6ZNE9 571 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 DAAM2Q86T65 1068 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 CACNA2D3Q8IZS8 1091 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 RSRC1Q96IZ7 334 aaKnown RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 COL15A1P39059 1388 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 PP2D1A8MPX8 630 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 CYP27B1O15528 508 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 GYG1P46976 350 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 SEPT7Q16181 437 aaKnown RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 ZNF579Q8NAF0 562 aaKnown RBP12.63□□□□□ -0.39
CLN3-238ENST00000569430 C6orf50Q9HD87 102 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 AGPAT5Q9NUQ2 364 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 STIM2Q9P246 746 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 ANKIB1Q9P2G1 1089 aa12.63□□□□□ -0.39
CLN3-238ENST00000569430 RIPOR2Q9Y4F9 1068 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms