RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 ADORA1P30542 326 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 PPARDQ03181 441 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 PLCB4Q15147 1175 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 PTPN21Q16825 1174 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 SPECC1Q5M775 1068 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 NANOGNBQ7Z5D8 188 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 GRIN2DO15399 1336 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 hCG_2014768A0A024R1R8 64 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 LRRD1A4D1F6 860 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 CTDNEP1O95476 244 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 ZMYM1Q5SVZ6 1142 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 CCDC170Q8IYT3 715 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 ZSCAN31Q96LW9 406 aaPredicted RBP12.05□□□□□ -0.48
CLK3-226ENST00000569406 PHLPP1O60346 1717 aa12.05□□□□□ -0.48
CLK3-226ENST00000569406 CICQ96RK0 1608 aaPredicted RBP12.05□□□□□ -0.48
CLK3-226ENST00000569406 GOLGA6L9A6NEM1 432 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 CEP104O60308 925 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 EXOSC10Q01780 885 aaKnown RBP12.04□□□□□ -0.48
CLK3-226ENST00000569406 CDC37Q16543 378 aaPredicted RBP12.04□□□□□ -0.48
CLK3-226ENST00000569406 MCMDC2Q4G0Z9 681 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 TRIM68Q6AZZ1 485 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 PNMA8AQ86V59 439 aaPredicted RBP12.04□□□□□ -0.48
CLK3-226ENST00000569406 VGLL2Q8N8G2 317 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 ATP11CQ8NB49 1132 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 MSANTD4Q8NCY6 345 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 AGAP3Q96P47 875 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 HPCAL4Q9UM19 191 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 AHDC1Q5TGY3 1603 aaPredicted RBP12.04□□□□□ -0.48
CLK3-226ENST00000569406 F8VZ95 297 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 LSM1O15116 133 aaKnown RBP12.04□□□□□ -0.48
CLK3-226ENST00000569406 CCDC175P0C221 793 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 SEPT14Q6ZU15 432 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 HMG20BQ9P0W2 317 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 RABL2AQ9UBK7 228 aaPredicted RBP12.04□□□□□ -0.48
CLK3-226ENST00000569406 MAST3O60307 1309 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 JAK2O60674 1132 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 CLCN2P51788 898 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 IFFO1Q0D2I5 559 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 HIBCHQ6NVY1 386 aaPredicted RBP12.04□□□□□ -0.48
CLK3-226ENST00000569406 FAM89AQ96GI7 184 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 ZNF570Q96NI8 536 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 BRD8Q9H0E9 1235 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 PAG1Q9NWQ8 432 aa12.04□□□□□ -0.48
CLK3-226ENST00000569406 BIN1O00499 593 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 ALOX15P16050 662 aaPredicted RBP12.03□□□□□ -0.48
CLK3-226ENST00000569406 IL15P40933 162 aaPredicted RBP12.03□□□□□ -0.48
CLK3-226ENST00000569406 KCNJ6P48051 423 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 AARSP49588 968 aaKnown RBP eCLIP12.03□□□□□ -0.48
CLK3-226ENST00000569406 CXorf38Q8TB03 319 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 OSBP2Q969R2 916 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 PCMTD2Q9NV79 361 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 CTAGE15A4D2H0 777 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 CTAGE8P0CG41 777 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 CYP19A1P11511 503 aaPredicted RBP12.03□□□□□ -0.48
CLK3-226ENST00000569406 TCERG1LQ5VWI1 586 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 BLOC1S2Q6QNY1 142 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 C14orf80Q86SX3 495 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 CTAGE6Q86UF2 777 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 DHX40Q8IX18 779 aaKnown RBP12.03□□□□□ -0.48
CLK3-226ENST00000569406 CTAGE4Q8IX94 777 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 NEK9Q8TD19 979 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 BTG4Q9NY30 223 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 ZNF510Q9Y2H8 683 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 DOCK2Q92608 1830 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 SALL1Q9NSC2 1324 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 DPPA5A6NC42 116 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 ATP6V1G2O95670 118 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 FAM160A1Q05DH4 1040 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 PPP1R7Q15435 360 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 NAA35Q5VZE5 725 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 MAEAQ7L5Y9 396 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 TTC30AQ86WT1 665 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 PDILTQ8N807 584 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 MTA3Q9BTC8 594 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 LZTFL1Q9NQ48 299 aa12.03□□□□□ -0.48
CLK3-226ENST00000569406 ZNF330Q9Y3S2 320 aaPredicted RBP12.03□□□□□ -0.48
CLK3-226ENST00000569406 RASSF10A6NK89 507 aa12.02□□□□□ -0.48
CLK3-226ENST00000569406 ZMYND10O75800 440 aa12.02□□□□□ -0.48
CLK3-226ENST00000569406 HSPD1P10809 573 aaKnown RBP12.02□□□□□ -0.48
CLK3-226ENST00000569406 ADD1P35611 737 aaKnown RBP12.02□□□□□ -0.48
CLK3-226ENST00000569406 BLMHQ13867 455 aa12.02□□□□□ -0.48
CLK3-226ENST00000569406 PI16Q6UXB8 463 aa12.02□□□□□ -0.48
CLK3-226ENST00000569406 DTNBP1Q96EV8 351 aa12.02□□□□□ -0.48
CLK3-226ENST00000569406 CORO1BQ9BR76 489 aa12.02□□□□□ -0.48
CLK3-226ENST00000569406 UBN2Q6ZU65 1347 aa12.02□□□□□ -0.48
CLK3-226ENST00000569406 ATXN2Q99700 1313 aaKnown RBP12.02□□□□□ -0.48
CLK3-226ENST00000569406 C4AP0C0L4 1744 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 C4BP0C0L5 1744 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 A0A1B0GUL6 1792 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 PCCAP05165 728 aaPredicted RBP12.02□□□□□ -0.49
CLK3-226ENST00000569406 KIF5BP33176 963 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 BRAPQ7Z569 592 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 CCDC65Q8IXS2 484 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 SDF4Q9BRK5 362 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 DESI2Q9BSY9 194 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 SWAP70Q9UH65 585 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 GFPT2O94808 682 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 ABL2P42684 1182 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 MAP7D1Q3KQU3 841 aa12.02□□□□□ -0.49
CLK3-226ENST00000569406 ARHGAP27Q6ZUM4 889 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms