RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 CALML3P27482 149 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 TXKP42681 527 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 GTF2A1P52655 376 aaPredicted RBP16.18■□□□□ 0.18
VPS35-210ENST00000568784 ZNF444Q8N0Y2 327 aaPredicted RBP16.18■□□□□ 0.18
VPS35-210ENST00000568784 STAG2Q8N3U4 1231 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 MOCS3O95396 460 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 USP17L8P0C7I0 530 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 TSPY3P0CV98 308 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 TSPY8P0CW00 308 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 TECP42680 631 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 USP14P54578 494 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 PDE4CQ08493 712 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 RRAGAQ7L523 313 aa16.18■□□□□ 0.18
VPS35-210ENST00000568784 PLEKP08567 350 aaPredicted RBP16.17■□□□□ 0.18
VPS35-210ENST00000568784 TROAPQ12815 778 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 SEC23AQ15436 765 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 SELENOOQ9BVL4 669 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 MED4Q9NPJ6 270 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 MARF1Q9Y4F3 1742 aaKnown RBP16.17■□□□□ 0.18
VPS35-210ENST00000568784 SHTN1A0MZ66 631 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 EZH2Q15910 746 aaKnown RBP16.17■□□□□ 0.18
VPS35-210ENST00000568784 PNMA1Q8ND90 353 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 MTRQ99707 1265 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 TMEM60Q9H2L4 133 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 DISC1Q9NRI5 854 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 NCK2O43639 380 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 FCER1AP12319 257 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 FGFR2P21802 821 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 DNM2P50570 870 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 CABP7Q86V35 215 aa16.17■□□□□ 0.18
VPS35-210ENST00000568784 PYM1Q9BRP8 204 aaKnown RBP16.17■□□□□ 0.18
VPS35-210ENST00000568784 USP17L3A6NCW0 530 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 USP17L4A6NCW7 530 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 LGALS16A8MUM7 142 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 PRDX5P30044 214 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 HLTFQ14527 1009 aaKnown RBP eCLIP16.16■□□□□ 0.18
VPS35-210ENST00000568784 KCTD19Q17RG1 926 aaPredicted RBP16.16■□□□□ 0.18
VPS35-210ENST00000568784 USP17L1Q7RTZ2 530 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 BCAS4Q8TDM0 211 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 HNRNPLLQ8WVV9 542 aaKnown RBP16.16■□□□□ 0.18
VPS35-210ENST00000568784 SLC4A9Q96Q91 983 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 TBC1D7Q9P0N9 293 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 MYO1AQ9UBC5 1043 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 NUTM2BA6NNL0 878 aaPredicted RBP16.16■□□□□ 0.18
VPS35-210ENST00000568784 NUTM2EB1AL46 878 aaPredicted RBP16.16■□□□□ 0.18
VPS35-210ENST00000568784 EBAG9O00559 213 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 SEMA3EO15041 775 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 ADAMTS2O95450 1211 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 EPS15P42566 896 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 TUBB4BP68371 445 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 BRINP3Q76B58 766 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 ZNF512BQ96KM6 892 aaPredicted RBP16.16■□□□□ 0.18
VPS35-210ENST00000568784 EHD4Q9H223 541 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 RAB21Q9UL25 225 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 TULP2O00295 520 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 GUCY2FP51841 1108 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 GNGT1P63211 74 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 PPP2R5BQ15173 497 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 SPATA20Q8TB22 786 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 ALS2CR12Q96Q35 445 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 TUBBP07437 444 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 PLCG1P19174 1290 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 LRRC31Q6UY01 552 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 GPATCH11Q8N954 259 aa16.16■□□□□ 0.18
VPS35-210ENST00000568784 REXO2Q9Y3B8 237 aaKnown RBP16.16■□□□□ 0.18
VPS35-210ENST00000568784 PBX1P40424 430 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 MAGEA1P43355 309 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 HERVK_113P62684 666 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 SF3A3Q12874 501 aaKnown RBP eCLIP16.15■□□□□ 0.18
VPS35-210ENST00000568784 LRRC41Q15345 812 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 E2F4Q16254 413 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 NFRKBQ6P4R8 1299 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 SLC44A5Q8NCS7 719 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 BCCIPQ9P287 314 aaKnown RBP eCLIP16.15■□□□□ 0.18
VPS35-210ENST00000568784 ESYT3A0FGR9 886 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 MYBL2P10244 700 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 CCDC40Q4G0X9 1142 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 RNF187Q5TA31 235 aaPredicted RBP16.15■□□□□ 0.18
VPS35-210ENST00000568784 SH3RF1Q7Z6J0 888 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 KANSL2Q9H9L4 492 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 TNS3Q68CZ2 1445 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 FAM205AQ6ZU69 1335 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 PNPLA7Q6ZV29 1317 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 IL17AQ16552 155 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 MAATS1Q7Z4T9 603 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 ELOA2Q8IYF1 753 aaPredicted RBP16.15■□□□□ 0.18
VPS35-210ENST00000568784 CALML4Q96GE6 196 aa16.15■□□□□ 0.18
VPS35-210ENST00000568784 RCCD1A6NED2 376 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 LONP1P36776 959 aaKnown RBP16.14■□□□□ 0.17
VPS35-210ENST00000568784 PDXDC2PQ6P474 469 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 MKRN1Q9UHC7 482 aaKnown RBP16.14■□□□□ 0.17
VPS35-210ENST00000568784 CNTNAP5Q8WYK1 1306 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 HSF2BPO75031 334 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 C8orf74Q6P047 294 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 TMC4Q7Z404 712 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 HPCAL4Q9UM19 191 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 ARFGEF2Q9Y6D5 1785 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 KIAA0754O94854 1291 aa16.14■□□□□ 0.17
VPS35-210ENST00000568784 CRKLP46109 303 aaKnown RBP16.14■□□□□ 0.17
VPS35-210ENST00000568784 EIF6P56537 245 aaKnown RBP16.14■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms