RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 TOX2Q96NM4 488 aa19.97■□□□□ 0.79
CLN3-231ENST00000568422 ACAD9Q9H845 621 aa19.97■□□□□ 0.79
CLN3-231ENST00000568422 SPC25Q9HBM1 224 aa19.97■□□□□ 0.79
CLN3-231ENST00000568422 HELLSQ9NRZ9 838 aa19.97■□□□□ 0.79
CLN3-231ENST00000568422 STX8Q9UNK0 236 aa19.97■□□□□ 0.79
CLN3-231ENST00000568422 KIAA0355O15063 1070 aa19.96■□□□□ 0.79
CLN3-231ENST00000568422 FOXP2O15409 715 aa19.96■□□□□ 0.79
CLN3-231ENST00000568422 CST5P28325 142 aaPredicted RBP19.96■□□□□ 0.79
CLN3-231ENST00000568422 IKQ13123 557 aaPredicted RBP19.96■□□□□ 0.79
CLN3-231ENST00000568422 SHHQ15465 462 aa19.96■□□□□ 0.79
CLN3-231ENST00000568422 ALX1Q15699 326 aa19.96■□□□□ 0.79
CLN3-231ENST00000568422 RCSD1Q6JBY9 416 aa19.96■□□□□ 0.79
CLN3-231ENST00000568422 PCSK9Q8NBP7 692 aaKnown RBP19.96■□□□□ 0.79
CLN3-231ENST00000568422 LENG1Q96BZ8 264 aaPredicted RBP19.96■□□□□ 0.79
CLN3-231ENST00000568422 STARD7Q9NQZ5 370 aa19.96■□□□□ 0.79
CLN3-231ENST00000568422 ISY1Q9ULR0 285 aaKnown RBP19.96■□□□□ 0.79
CLN3-231ENST00000568422 DCDC2CA8MYV0 355 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 PQBP1O60828 265 aaKnown RBP19.95■□□□□ 0.78
CLN3-231ENST00000568422 MCCP23508 829 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 PDE1AP54750 535 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 CTDSPL2Q05D32 466 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 AAMPQ13685 434 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 KCNA10Q16322 511 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 CCSAPQ6IQ19 270 aaPredicted RBP19.95■□□□□ 0.78
CLN3-231ENST00000568422 CCDC129Q6ZRS4 1044 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 ARMCX2Q7L311 632 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 FGD4Q96M96 766 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 IL17RBQ9NRM6 502 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 ELP1O95163 1332 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 MROH7Q68CQ1 1323 aa19.95■□□□□ 0.78
CLN3-231ENST00000568422 ORC4O43929 436 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 RANBP6O60518 1105 aaKnown RBP19.94■□□□□ 0.78
CLN3-231ENST00000568422 FGRP09769 529 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 RAG1P15918 1043 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 NOVP48745 357 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 CCDC144BQ3MJ40 725 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 C9orf50Q5SZB4 431 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 ZNF697Q5TEC3 545 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 CCDC144CPQ8IYA2 1237 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 FAM133AQ8N9E0 248 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 GLT1D1Q96MS3 346 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 UPF3AQ9H1J1 476 aaKnown RBP19.94■□□□□ 0.78
CLN3-231ENST00000568422 HOMER2Q9NSB8 354 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 ZNF536O15090 1300 aa19.94■□□□□ 0.78
CLN3-231ENST00000568422 ASB14A6NK59 587 aa19.93■□□□□ 0.78
CLN3-231ENST00000568422 C6orf222P0C671 652 aaPredicted RBP19.93■□□□□ 0.78
CLN3-231ENST00000568422 GJA9P57773 515 aa19.93■□□□□ 0.78
CLN3-231ENST00000568422 SMAD3P84022 425 aaKnown RBP19.93■□□□□ 0.78
CLN3-231ENST00000568422 MCMDC2Q4G0Z9 681 aa19.93■□□□□ 0.78
CLN3-231ENST00000568422 AGBL1Q96MI9 1066 aa19.93■□□□□ 0.78
CLN3-231ENST00000568422 TRERF1Q96PN7 1200 aa19.93■□□□□ 0.78
CLN3-231ENST00000568422 CRBNQ96SW2 442 aa19.93■□□□□ 0.78
CLN3-231ENST00000568422 A1CFQ9NQ94 594 aaKnown RBP19.93■□□□□ 0.78
CLN3-231ENST00000568422 RNF146Q9NTX7 359 aa19.93■□□□□ 0.78
CLN3-231ENST00000568422 TMEM39AQ9NV64 488 aa19.93■□□□□ 0.78
CLN3-231ENST00000568422 A0A0C4DFX4 3053 aa19.93■□□□□ 0.78
CLN3-231ENST00000568422 NKX3-2P78367 333 aa19.92■□□□□ 0.78
CLN3-231ENST00000568422 FAAP100Q0VG06 881 aa19.92■□□□□ 0.78
CLN3-231ENST00000568422 VPS53Q5VIR6 699 aa19.92■□□□□ 0.78
CLN3-231ENST00000568422 KCTD1Q719H9 257 aa19.92■□□□□ 0.78
CLN3-231ENST00000568422 DCAF4Q8WV16 495 aa19.92■□□□□ 0.78
CLN3-231ENST00000568422 DLL1O00548 723 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 NMT2O60551 498 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 ASGR1P07306 291 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 ITGB8P26012 769 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 CNTN2Q02246 1040 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 GNASQ5JWF2 1037 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 KATNBL1Q9H079 304 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 INCENPQ9NQS7 918 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 PRR12Q9ULL5 1215 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 ZMYM6O95789 1325 aa19.91■□□□□ 0.78
CLN3-231ENST00000568422 ADCY6O43306 1168 aa19.9■□□□□ 0.78
CLN3-231ENST00000568422 FGAP02671 866 aa19.9■□□□□ 0.78
CLN3-231ENST00000568422 ALAS1P13196 640 aa19.9■□□□□ 0.78
CLN3-231ENST00000568422 CDK7P50613 346 aa19.9■□□□□ 0.78
CLN3-231ENST00000568422 TNFAIP2Q03169 654 aa19.9■□□□□ 0.78
CLN3-231ENST00000568422 FPGSQ05932 587 aa19.9■□□□□ 0.78
CLN3-231ENST00000568422 GUCD1Q96NT3 240 aa19.9■□□□□ 0.78
CLN3-231ENST00000568422 TCP11L1Q9NUJ3 509 aa19.9■□□□□ 0.78
CLN3-231ENST00000568422 MYADML2A6NDP7 307 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 SOWAHBA6NEL2 793 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 LRRC37A2A6NM11 1700 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 TIMP1P01033 207 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 TOP1P11387 765 aaKnown RBP19.89■□□□□ 0.77
CLN3-231ENST00000568422 PCP11498 1178 aaKnown RBP19.89■□□□□ 0.77
CLN3-231ENST00000568422 CCDC174Q6PII3 467 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 VTI1AQ96AJ9 217 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 CHMP4CQ96CF2 233 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 RNPC3Q96LT9 517 aaKnown RBP19.89■□□□□ 0.77
CLN3-231ENST00000568422 TOMM22Q9NS69 142 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 CYP39A1Q9NYL5 469 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 PNMA2Q9UL42 364 aa19.89■□□□□ 0.77
CLN3-231ENST00000568422 A0A0D9SFI3 127 aa19.88■□□□□ 0.77
CLN3-231ENST00000568422 A0A0U1RQG5 324 aaPredicted RBP19.88■□□□□ 0.77
CLN3-231ENST00000568422 ARVCFO00192 962 aa19.88■□□□□ 0.77
CLN3-231ENST00000568422 ICAM1P05362 532 aa19.88■□□□□ 0.77
CLN3-231ENST00000568422 HSPD1P10809 573 aaKnown RBP19.88■□□□□ 0.77
CLN3-231ENST00000568422 MFAP1P55081 439 aaKnown RBP19.88■□□□□ 0.77
CLN3-231ENST00000568422 CCDC96Q2M329 555 aa19.88■□□□□ 0.77
CLN3-231ENST00000568422 BTNL9Q6UXG8 535 aa19.88■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms