RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	TMEM199	Q8N511	208 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	BCL11A	Q9H165	835 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	SPC25	Q9HBM1	224 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	ZBTB40	Q9NUA8	1239 aa		13.64	□□□□□ -0.23
TCF4-238	ENST00000568169	IGKV6D-41	A0A0C4DH26	115 aa		13.63	□□□□□ -0.23
TCF4-238	ENST00000568169		A0A0U1RQG5	324 aa	Predicted RBP	13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	GSG1L2	A8MUP6	293 aa		13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	ZBED4	O75132	1171 aa		13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	HNRNPU	Q00839	825 aa	Known RBP eCLIP	13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	GNAS	Q5JWF2	1037 aa		13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	ATXN2L	Q8WWM7	1075 aa	Known RBP	13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	VTI1A	Q96AJ9	217 aa		13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	STRBP	Q96SI9	672 aa	Known RBP	13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	GAS2L1	Q99501	681 aa	Predicted RBP	13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	KATNBL1	Q9H079	304 aa		13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	SLC38A10	Q9HBR0	1119 aa		13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	RAVER2	Q9HCJ3	691 aa	Known RBP	13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	FBXO40	Q9UH90	709 aa		13.63	□□□□□ -0.23
TCF4-238	ENST00000568169	LCT	P09848	1927 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	LRRC37A2	A6NM11	1700 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	CD4	P01730	458 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	ACR	P10323	421 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	MS4A1	P11836	297 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	SLC4A3	P48751	1232 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	OAZ1	P54368	228 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	GIMAP6	Q6P9H5	292 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	PSRC1	Q6PGN9	363 aa	Predicted RBP	13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	CCDC129	Q6ZRS4	1044 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	ARMCX2	Q7L311	632 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	ANKRD35	Q8N283	1001 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	CHST13	Q8NET6	341 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	HERVK_113	Q902F9	699 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	MKL1	Q969V6	931 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	PPP1R12C	Q9BZL4	782 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	PRDM12	Q9H4Q4	367 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	MKNK2	Q9HBH9	465 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	CLIP2	Q9UDT6	1046 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	SYNPO2	Q9UMS6	1093 aa		13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	PRRC2B	Q5JSZ5	2229 aa	Known RBP	13.62	□□□□□ -0.23
TCF4-238	ENST00000568169	TLR3	O15455	904 aa	Known RBP	13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	ADGRE1	Q14246	886 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	CCDC144CP	Q8IYA2	1237 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	STK11IP	Q8N1F8	1099 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	SLC43A3	Q8NBI5	491 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	KIFC2	Q96AC6	838 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	ASB2	Q96Q27	587 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	IL23A	Q9NPF7	189 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	THEG	Q9P2T0	379 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	FEM1B	Q9UK73	627 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	DDX19B	Q9UMR2	479 aa		13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.61	□□□□□ -0.23
TCF4-238	ENST00000568169	MINDY4B	A8MYZ0	360 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	COL9A1	P20849	921 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	CYP2C18	P33260	490 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	SCN5A	Q14524	2016 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	RAB30	Q15771	203 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	FAM133A	Q8N9E0	248 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	PPM1E	Q8WY54	764 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	CEP95	Q96GE4	821 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	MSRA	Q9UJ68	235 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	COG6	Q9Y2V7	657 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	ASTN1	O14525	1302 aa		13.6	□□□□□ -0.23
TCF4-238	ENST00000568169	CABYR	O75952	493 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	FGB	P02675	491 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	FDX1	P10109	184 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	BEX3	Q00994	111 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	CNTN2	Q02246	1040 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	TNFAIP2	Q03169	654 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	CXCL17	Q6UXB2	119 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	GMCL1P1	Q8NEA9	526 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	OSBP2	Q969R2	916 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	MTIF3	Q9H2K0	278 aa	Known RBP	13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	MTMR4	Q9NYA4	1195 aa		13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	GNE	Q9Y223	722 aa	Known RBP	13.59	□□□□□ -0.23
TCF4-238	ENST00000568169	TRIP12	Q14669	1992 aa	Predicted RBP	13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	TTLL1	O95922	423 aa		13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	MRPS5	P82675	430 aa	Known RBP	13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	LRRC47	Q8N1G4	583 aa	Known RBP	13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	KBTBD3	Q8NAB2	608 aa		13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	ADAMTS19	Q8TE59	1207 aa		13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	APPBP2	Q92624	585 aa		13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	LRRCC1	Q9C099	1032 aa		13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	NKX2-4	Q9H2Z4	354 aa		13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	HIPK3	Q9H422	1215 aa		13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	ZNF287	Q9HBT7	754 aa		13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	YBX2	Q9Y2T7	364 aa	Known RBP	13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	SPTBN5	Q9NRC6	3674 aa	Known RBP	13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	GRIN2D	O15399	1336 aa		13.58	□□□□□ -0.24
TCF4-238	ENST00000568169	TET1	Q8NFU7	2136 aa		13.57	□□□□□ -0.24
TCF4-238	ENST00000568169	SOWAHB	A6NEL2	793 aa		13.57	□□□□□ -0.24
TCF4-238	ENST00000568169	PRDM1	O75626	825 aa		13.57	□□□□□ -0.24
TCF4-238	ENST00000568169	BMP3	P12645	472 aa		13.57	□□□□□ -0.24
TCF4-238	ENST00000568169	ITGA7	Q13683	1181 aa		13.57	□□□□□ -0.24
TCF4-238	ENST00000568169	CCDC85B	Q15834	202 aa	Predicted RBP	13.57	□□□□□ -0.24
TCF4-238	ENST00000568169	SLFN13	Q68D06	897 aa		13.57	□□□□□ -0.24
TCF4-238	ENST00000568169	NOL8	Q76FK4	1167 aa	Known RBP	13.57	□□□□□ -0.24

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