RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 PRDM10Q9NQV6 1147 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 IL16Q14005 1332 aa7.47□□□□□ -1.21
VPS39-209ENST00000568029 MINDY4BA8MYZ0 360 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 PPM1GO15355 546 aaPredicted RBP7.46□□□□□ -1.22
VPS39-209ENST00000568029 CYP27B1O15528 508 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 TMPOP42166 694 aaKnown RBP7.46□□□□□ -1.22
VPS39-209ENST00000568029 TGFB2P61812 414 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 CALD1Q05682 793 aaKnown RBP7.46□□□□□ -1.22
VPS39-209ENST00000568029 COL9A2Q14055 689 aaPredicted RBP7.46□□□□□ -1.22
VPS39-209ENST00000568029 NAALADL2Q58DX5 795 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 SNAP47Q5SQN1 464 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 NBPF6Q5VWK0 638 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 FBXL19Q6PCT2 694 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 TMEM130Q8N3G9 435 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 GRIN3AQ8TCU5 1115 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 GATAD2BQ8WXI9 593 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 NBPF4Q96M43 638 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 PLEKHF1Q96S99 279 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 MRPL18Q9H0U6 180 aaKnown RBP7.46□□□□□ -1.22
VPS39-209ENST00000568029 CBX8Q9HC52 389 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 KCNK4Q9NYG8 393 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 POLKQ9UBT6 870 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 INPP5FQ9Y2H2 1132 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 COL11A2P13942 1736 aaPredicted RBP7.46□□□□□ -1.22
VPS39-209ENST00000568029 MAP3K19Q56UN5 1328 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 FANCIQ9NVI1 1328 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 MYH14Q7Z406 1995 aaKnown RBP7.46□□□□□ -1.22
VPS39-209ENST00000568029 KDRP35968 1356 aa7.46□□□□□ -1.22
VPS39-209ENST00000568029 AFDNP55196 1824 aaKnown RBP7.45□□□□□ -1.22
VPS39-209ENST00000568029 FAM221AA4D161 298 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 CILPO75339 1184 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 CTCFP49711 727 aaPredicted RBP7.45□□□□□ -1.22
VPS39-209ENST00000568029 NLRP12P59046 1061 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 DDR1Q08345 913 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 KIF4BQ2VIQ3 1234 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 CENPQQ7L2Z9 268 aaPredicted RBP7.45□□□□□ -1.22
VPS39-209ENST00000568029 PIGBQ92521 554 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 IP6K1Q92551 441 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 GPRASP2Q96D09 838 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 GMLQ99445 158 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 CCDC86Q9H6F5 360 aaKnown RBP7.45□□□□□ -1.22
VPS39-209ENST00000568029 SUGCTQ9HAC7 445 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 CNTNAP5Q8WYK1 1306 aa7.45□□□□□ -1.22
VPS39-209ENST00000568029 TJP1Q07157 1748 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 ADAMTSL1Q8N6G6 1762 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 DDX3YO15523 660 aaKnown RBP7.44□□□□□ -1.22
VPS39-209ENST00000568029 BCAR3O75815 825 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 GYS1P13807 737 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 HOXC9P31274 260 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 RGS19P49795 217 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 RARSP54136 660 aaKnown RBP7.44□□□□□ -1.22
VPS39-209ENST00000568029 RIPK4P57078 832 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 PAK2Q13177 524 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 MPP2Q14168 576 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 DUOXA2Q1HG44 320 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 EXOSC6Q5RKV6 272 aaKnown RBP7.44□□□□□ -1.22
VPS39-209ENST00000568029 C20orf194Q5TEA3 1177 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 MAP1SQ66K74 1059 aaPredicted RBP7.44□□□□□ -1.22
VPS39-209ENST00000568029 GOLM1Q8NBJ4 401 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 KCNB2Q92953 911 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 LENG1Q96BZ8 264 aaPredicted RBP7.44□□□□□ -1.22
VPS39-209ENST00000568029 NACC1Q96RE7 527 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 USP26Q9BXU7 913 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 TMPRSS13Q9BYE2 586 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 PCDHB5Q9Y5E4 795 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 TACC3Q9Y6A5 838 aa7.44□□□□□ -1.22
VPS39-209ENST00000568029 CACNA1SQ13698 1873 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 GLTPD2A6NH11 291 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 ECEL1O95672 775 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 CTSBP07858 339 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 VEGFAP15692 232 aaPredicted RBP7.43□□□□□ -1.22
VPS39-209ENST00000568029 LMOD3Q0VAK6 560 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 DALRD3Q5D0E6 543 aaKnown RBP7.43□□□□□ -1.22
VPS39-209ENST00000568029 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.43□□□□□ -1.22
VPS39-209ENST00000568029 SLITRK4Q8IW52 837 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 GPBAR1Q8TDU6 330 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 EAF1Q96JC9 268 aaPredicted RBP7.43□□□□□ -1.22
VPS39-209ENST00000568029 SEC16BQ96JE7 1060 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 RNF208Q9H0X6 261 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 SRP68Q9UHB9 627 aaKnown RBP7.43□□□□□ -1.22
VPS39-209ENST00000568029 ASAP1Q9ULH1 1129 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 SNCAIPQ9Y6H5 919 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 CARMIL3Q8ND23 1372 aa7.43□□□□□ -1.22
VPS39-209ENST00000568029 COL3A1P02461 1466 aaPredicted RBP7.43□□□□□ -1.22
VPS39-209ENST00000568029 DICER1Q9UPY3 1922 aaKnown RBP7.42□□□□□ -1.22
VPS39-209ENST00000568029 NRXN2Q9P2S2 1712 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 F6X3S4 739 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 ZNF862O60290 1169 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 DLGAP3O95886 979 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 F13A1P00488 732 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 PRKAR2BP31323 418 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 IL13P35225 146 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 NRG1Q02297 640 aaPredicted RBP7.42□□□□□ -1.22
VPS39-209ENST00000568029 RPL6Q02878 288 aaKnown RBP7.42□□□□□ -1.22
VPS39-209ENST00000568029 FAM160A1Q05DH4 1040 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 RRS1Q15050 365 aaKnown RBP7.42□□□□□ -1.22
VPS39-209ENST00000568029 SF3A1Q15459 793 aaKnown RBP7.42□□□□□ -1.22
VPS39-209ENST00000568029 NFE2L2Q16236 605 aa7.42□□□□□ -1.22
VPS39-209ENST00000568029 BNC2Q6ZN30 1099 aaPredicted RBP7.42□□□□□ -1.22
VPS39-209ENST00000568029 KIAA1211Q6ZU35 1233 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms