RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 A0A0D9SFI3 127 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 A0A1W2PQ45 241 aaPredicted RBP19.03■□□□□ 0.64
CLN3-229ENST00000567963 A0A1W2PQY0 241 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 TRIM43BA6NCK2 446 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 ORC4O43929 436 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 TLE2Q04725 743 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 IKQ13123 557 aaPredicted RBP19.03■□□□□ 0.64
CLN3-229ENST00000567963 ACVR2BQ13705 512 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 KCTD1Q719H9 257 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 SH3RF1Q7Z6J0 888 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 TRIM43Q96BQ3 446 aaPredicted RBP19.03■□□□□ 0.64
CLN3-229ENST00000567963 AGBL1Q96MI9 1066 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 ABHD16BQ9H3Z7 469 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 HOMER2Q9NSB8 354 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.03■□□□□ 0.64
CLN3-229ENST00000567963 ZHX1Q9UKY1 873 aaPredicted RBP19.03■□□□□ 0.64
CLN3-229ENST00000567963 DUSP11O75319 330 aaKnown RBP19.03■□□□□ 0.64
CLN3-229ENST00000567963 KLHDC9Q8NEP7 349 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 BADQ92934 168 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 LNPKQ9C0E8 428 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 ACAD9Q9H845 621 aa19.03■□□□□ 0.64
CLN3-229ENST00000567963 SYNRGQ9UMZ2 1314 aa19.02■□□□□ 0.64
CLN3-229ENST00000567963 MCM3APO60318 1980 aa19.02■□□□□ 0.63
CLN3-229ENST00000567963 HSPD1P10809 573 aaKnown RBP19.02■□□□□ 0.63
CLN3-229ENST00000567963 CNTN2Q02246 1040 aa19.02■□□□□ 0.63
CLN3-229ENST00000567963 CCSAPQ6IQ19 270 aaPredicted RBP19.02■□□□□ 0.63
CLN3-229ENST00000567963 ARMCX2Q7L311 632 aa19.02■□□□□ 0.63
CLN3-229ENST00000567963 SMC5Q8IY18 1101 aa19.02■□□□□ 0.63
CLN3-229ENST00000567963 TRIM6-TRIM34B2RNG4 842 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 ACLYP53396 1101 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 KCNA10Q16322 511 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 TKFCQ3LXA3 575 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 CCDC144BQ3MJ40 725 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 RASGRP2Q7LDG7 609 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 ZNF589Q86UQ0 364 aaPredicted RBP19.01■□□□□ 0.63
CLN3-229ENST00000567963 CCDC144CPQ8IYA2 1237 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 FAM133AQ8N9E0 248 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 NUP133Q8WUM0 1156 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 YTHDC1Q96MU7 727 aaKnown RBP19.01■□□□□ 0.63
CLN3-229ENST00000567963 TRERF1Q96PN7 1200 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 RWDD1Q9H446 243 aaPredicted RBP19.01■□□□□ 0.63
CLN3-229ENST00000567963 A1CFQ9NQ94 594 aaKnown RBP19.01■□□□□ 0.63
CLN3-229ENST00000567963 RNF146Q9NTX7 359 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 MTMR10Q9NXD2 777 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 PRR12Q9ULL5 1215 aa19.01■□□□□ 0.63
CLN3-229ENST00000567963 MOXD2PA6NHM9 499 aa19■□□□□ 0.63
CLN3-229ENST00000567963 POTEB2H3BUK9 544 aa19■□□□□ 0.63
CLN3-229ENST00000567963 ADCY6O43306 1168 aa19■□□□□ 0.63
CLN3-229ENST00000567963 CLTBP09497 229 aa19■□□□□ 0.63
CLN3-229ENST00000567963 NMIQ13287 307 aaPredicted RBP19■□□□□ 0.63
CLN3-229ENST00000567963 SHHQ15465 462 aa19■□□□□ 0.63
CLN3-229ENST00000567963 B4GALNT3Q6L9W6 998 aa19■□□□□ 0.63
CLN3-229ENST00000567963 RILPL2Q969X0 211 aa19■□□□□ 0.63
CLN3-229ENST00000567963 STARD7Q9NQZ5 370 aa19■□□□□ 0.63
CLN3-229ENST00000567963 TOMM22Q9NS69 142 aa19■□□□□ 0.63
CLN3-229ENST00000567963 MYADML2A6NDP7 307 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 ALAS1P13196 640 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 ITGB8P26012 769 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 CST5P28325 142 aaPredicted RBP18.99■□□□□ 0.63
CLN3-229ENST00000567963 SNAP25P60880 206 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 RRP12Q5JTH9 1297 aaKnown RBP18.99■□□□□ 0.63
CLN3-229ENST00000567963 CCDC174Q6PII3 467 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 DCAF4Q8WV16 495 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 TOX2Q96NM4 488 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 KATNBL1Q9H079 304 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 TCP11L1Q9NUJ3 509 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 MTMR7Q9Y216 660 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 ZMYM6O95789 1325 aa18.99■□□□□ 0.63
CLN3-229ENST00000567963 PQBP1O60828 265 aaKnown RBP18.98■□□□□ 0.63
CLN3-229ENST00000567963 IGHDP01880 384 aa18.98■□□□□ 0.63
CLN3-229ENST00000567963 IRX5P78411 483 aaPredicted RBP18.98■□□□□ 0.63
CLN3-229ENST00000567963 C9orf50Q5SZB4 431 aa18.98■□□□□ 0.63
CLN3-229ENST00000567963 ANKRD33Q7Z3H0 272 aa18.98■□□□□ 0.63
CLN3-229ENST00000567963 CCDC171Q6TFL3 1326 aa18.98■□□□□ 0.63
CLN3-229ENST00000567963 SOWAHBA6NEL2 793 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 KIAA0355O15063 1070 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 C6orf222P0C671 652 aaPredicted RBP18.97■□□□□ 0.63
CLN3-229ENST00000567963 GJA9P57773 515 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 FAAP100Q0VG06 881 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 MUM1L1Q5H9M0 696 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 FAM109BQ6ICB4 259 aaPredicted RBP18.97■□□□□ 0.63
CLN3-229ENST00000567963 CHD1LQ86WJ1 897 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 PLEKHM2Q8IWE5 1019 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 PCSK9Q8NBP7 692 aaKnown RBP18.97■□□□□ 0.63
CLN3-229ENST00000567963 SLC17A8Q8NDX2 589 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 TMEM47Q9BQJ4 181 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 UPF3AQ9H1J1 476 aaKnown RBP18.97■□□□□ 0.63
CLN3-229ENST00000567963 OSBPL3Q9H4L5 887 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 SPC25Q9HBM1 224 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 STXBP5LQ9Y2K9 1186 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 ASB14A6NK59 587 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 ICAM1P05362 532 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 ASGR1P07306 291 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 TOP1P11387 765 aaKnown RBP18.97■□□□□ 0.63
CLN3-229ENST00000567963 SDSP20132 328 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 HAND2P61296 217 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 CCDC96Q2M329 555 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 TTBK2Q6IQ55 1244 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 BTNL9Q6UXG8 535 aa18.97■□□□□ 0.63
CLN3-229ENST00000567963 GLT1D1Q96MS3 346 aa18.97■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms