RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 CNPY2Q9Y2B0 182 aa21.96■■□□□ 1.11
CLN3-227ENST00000567495 ZNF536O15090 1300 aa21.96■■□□□ 1.11
CLN3-227ENST00000567495 H0YGN5 161 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 EVI5O60447 810 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 ICAM1P05362 532 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 BMP2KLQ5H9B9 411 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 MAMDC4Q6UXC1 1216 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 KIAA1211Q6ZU35 1233 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 ARRDC4Q8NCT1 418 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 AGBL1Q96MI9 1066 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 ZKSCAN3Q9BRR0 538 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 RANBP17Q9H2T7 1088 aaKnown RBP21.95■■□□□ 1.1
CLN3-227ENST00000567495 RNF146Q9NTX7 359 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 SYNGAP1Q96PV0 1343 aa21.95■■□□□ 1.1
CLN3-227ENST00000567495 PTH1RQ03431 593 aa21.94■■□□□ 1.1
CLN3-227ENST00000567495 TTBK2Q6IQ55 1244 aa21.94■■□□□ 1.1
CLN3-227ENST00000567495 CCDC174Q6PII3 467 aa21.94■■□□□ 1.1
CLN3-227ENST00000567495 ENAHQ8N8S7 591 aaPredicted RBP21.94■■□□□ 1.1
CLN3-227ENST00000567495 PNMA1Q8ND90 353 aa21.94■■□□□ 1.1
CLN3-227ENST00000567495 TRERF1Q96PN7 1200 aa21.94■■□□□ 1.1
CLN3-227ENST00000567495 GPCPD1Q9NPB8 672 aa21.94■■□□□ 1.1
CLN3-227ENST00000567495 HOMER2Q9NSB8 354 aa21.94■■□□□ 1.1
CLN3-227ENST00000567495 CCPG1Q9ULG6 757 aa21.94■■□□□ 1.1
CLN3-227ENST00000567495 PFASO15067 1338 aa21.94■■□□□ 1.1
CLN3-227ENST00000567495 DNM1LO00429 736 aa21.93■■□□□ 1.1
CLN3-227ENST00000567495 COL6A1P12109 1028 aa21.93■■□□□ 1.1
CLN3-227ENST00000567495 ALAS1P13196 640 aa21.93■■□□□ 1.1
CLN3-227ENST00000567495 SLC16A2P36021 539 aa21.93■■□□□ 1.1
CLN3-227ENST00000567495 FRMPD2Q68DX3 1309 aaPredicted RBP21.93■■□□□ 1.1
CLN3-227ENST00000567495 RASGRP2Q7LDG7 609 aa21.93■■□□□ 1.1
CLN3-227ENST00000567495 MAP4K1Q92918 833 aa21.93■■□□□ 1.1
CLN3-227ENST00000567495 TNKSO95271 1327 aa21.92■■□□□ 1.1
CLN3-227ENST00000567495 POTEB2H3BUK9 544 aa21.92■■□□□ 1.1
CLN3-227ENST00000567495 CYP21A2P08686 494 aa21.92■■□□□ 1.1
CLN3-227ENST00000567495 PRAMEF19Q5SWL8 479 aa21.92■■□□□ 1.1
CLN3-227ENST00000567495 CCDC136Q96JN2 1154 aa21.92■■□□□ 1.1
CLN3-227ENST00000567495 CEP290O15078 2479 aa21.92■■□□□ 1.1
CLN3-227ENST00000567495 RARBP10826 455 aa21.91■■□□□ 1.1
CLN3-227ENST00000567495 ASPRV1Q53RT3 343 aa21.91■■□□□ 1.1
CLN3-227ENST00000567495 IFIT1BQ5T764 474 aaKnown RBP21.91■■□□□ 1.1
CLN3-227ENST00000567495 RALYLQ86SE5 291 aaKnown RBP21.91■■□□□ 1.1
CLN3-227ENST00000567495 A1CFQ9NQ94 594 aaKnown RBP21.91■■□□□ 1.1
CLN3-227ENST00000567495 COL11A1P12107 1806 aaPredicted RBP21.91■■□□□ 1.1
CLN3-227ENST00000567495 WDR19Q8NEZ3 1342 aa21.9■■□□□ 1.1
CLN3-227ENST00000567495 NEFLP07196 543 aa21.9■■□□□ 1.1
CLN3-227ENST00000567495 AKR1A1P14550 325 aa21.9■■□□□ 1.1
CLN3-227ENST00000567495 SNAP25P60880 206 aa21.9■■□□□ 1.1
CLN3-227ENST00000567495 FAM133AQ8N9E0 248 aa21.9■■□□□ 1.1
CLN3-227ENST00000567495 SNAI1O95863 264 aaPredicted RBP21.89■■□□□ 1.09
CLN3-227ENST00000567495 ZNF865P0CJ78 1059 aaPredicted RBP21.89■■□□□ 1.09
CLN3-227ENST00000567495 SART3Q15020 963 aaKnown RBP21.89■■□□□ 1.09
CLN3-227ENST00000567495 NCOA7Q8NI08 942 aa21.89■■□□□ 1.09
CLN3-227ENST00000567495 ESYT1Q9BSJ8 1104 aa21.89■■□□□ 1.09
CLN3-227ENST00000567495 ABHD16BQ9H3Z7 469 aa21.89■■□□□ 1.09
CLN3-227ENST00000567495 FAM184BQ9ULE4 1060 aa21.89■■□□□ 1.09
CLN3-227ENST00000567495 ERICH2A1L162 156 aa21.88■■□□□ 1.09
CLN3-227ENST00000567495 ASB14A6NK59 587 aa21.88■■□□□ 1.09
CLN3-227ENST00000567495 KBTBD13C9JR72 458 aa21.88■■□□□ 1.09
CLN3-227ENST00000567495 PARP1P09874 1014 aaKnown RBP21.88■■□□□ 1.09
CLN3-227ENST00000567495 CASC1Q6TDU7 716 aa21.88■■□□□ 1.09
CLN3-227ENST00000567495 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.88■■□□□ 1.09
CLN3-227ENST00000567495 CYP39A1Q9NYL5 469 aa21.88■■□□□ 1.09
CLN3-227ENST00000567495 RBM8AQ9Y5S9 174 aaKnown RBP21.88■■□□□ 1.09
CLN3-227ENST00000567495 LAMA4Q16363 1823 aa21.87■■□□□ 1.09
CLN3-227ENST00000567495 E7EWF7 191 aa21.87■■□□□ 1.09
CLN3-227ENST00000567495 SEC23AQ15436 765 aa21.87■■□□□ 1.09
CLN3-227ENST00000567495 MUM1L1Q5H9M0 696 aa21.87■■□□□ 1.09
CLN3-227ENST00000567495 FGD4Q96M96 766 aa21.87■■□□□ 1.09
CLN3-227ENST00000567495 MAF1Q9H063 256 aa21.87■■□□□ 1.09
CLN3-227ENST00000567495 XPNPEP3Q9NQH7 507 aa21.87■■□□□ 1.09
CLN3-227ENST00000567495 LOC102724159A0A0B4J2E5 919 aa21.86■■□□□ 1.09
CLN3-227ENST00000567495 GOLGA8HP0CJ92 632 aa21.86■■□□□ 1.09
CLN3-227ENST00000567495 TAL1P17542 331 aaPredicted RBP21.86■■□□□ 1.09
CLN3-227ENST00000567495 CNTN2Q02246 1040 aa21.86■■□□□ 1.09
CLN3-227ENST00000567495 ACVR2BQ13705 512 aa21.86■■□□□ 1.09
CLN3-227ENST00000567495 PWP2Q15269 919 aaKnown RBP21.86■■□□□ 1.09
CLN3-227ENST00000567495 ANO1Q5XXA6 986 aa21.86■■□□□ 1.09
CLN3-227ENST00000567495 NSMFQ6X4W1 530 aa21.86■■□□□ 1.09
CLN3-227ENST00000567495 CYB5R4Q7L1T6 521 aa21.86■■□□□ 1.09
CLN3-227ENST00000567495 ARMCX2Q7L311 632 aa21.86■■□□□ 1.09
CLN3-227ENST00000567495 RNF180Q86T96 592 aa21.86■■□□□ 1.09
CLN3-227ENST00000567495 SENP6Q9GZR1 1112 aaPredicted RBP21.86■■□□□ 1.09
CLN3-227ENST00000567495 LSG1Q9H089 658 aaKnown RBP21.86■■□□□ 1.09
CLN3-227ENST00000567495 ADD3Q9UEY8 706 aaKnown RBP21.86■■□□□ 1.09
CLN3-227ENST00000567495 ZHX1Q9UKY1 873 aaPredicted RBP21.86■■□□□ 1.09
CLN3-227ENST00000567495 IFIT3O14879 490 aaKnown RBP21.85■■□□□ 1.09
CLN3-227ENST00000567495 LRRC41Q15345 812 aa21.85■■□□□ 1.09
CLN3-227ENST00000567495 GJC2Q5T442 439 aaPredicted RBP21.85■■□□□ 1.09
CLN3-227ENST00000567495 CCDC144CPQ8IYA2 1237 aa21.85■■□□□ 1.09
CLN3-227ENST00000567495 MTA3Q9BTC8 594 aa21.85■■□□□ 1.09
CLN3-227ENST00000567495 SOWAHBA6NEL2 793 aa21.84■■□□□ 1.09
CLN3-227ENST00000567495 DUSP11O75319 330 aaKnown RBP21.84■■□□□ 1.09
CLN3-227ENST00000567495 C7orf61Q8IZ16 206 aa21.84■■□□□ 1.09
CLN3-227ENST00000567495 RGS22Q8NE09 1264 aa21.84■■□□□ 1.09
CLN3-227ENST00000567495 UBA5Q9GZZ9 404 aa21.84■■□□□ 1.09
CLN3-227ENST00000567495 ZNFX1Q9P2E3 1918 aaKnown RBP21.83■■□□□ 1.09
CLN3-227ENST00000567495 MYCNP04198 464 aaPredicted RBP21.83■■□□□ 1.09
CLN3-227ENST00000567495 BAATQ14032 418 aaPredicted RBP21.83■■□□□ 1.09
CLN3-227ENST00000567495 HABP4Q5JVS0 413 aaKnown RBP21.83■■□□□ 1.09
CLN3-227ENST00000567495 ADGRF4Q8IZF3 695 aa21.83■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms