RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 POU3F3P20264 500 aaPredicted RBP13.47□□□□□ -0.25
CLN3-226ENST00000567160 CYP7A1P22680 504 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 CST5P28325 142 aaPredicted RBP13.47□□□□□ -0.25
CLN3-226ENST00000567160 COPB2P35606 906 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 MRE11P49959 708 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 SEPT2Q15019 361 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 ZNF792Q3KQV3 632 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 ZSCAN25Q6NSZ9 544 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 DIAPH3Q9NSV4 1193 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 SLC4A7Q9Y6M7 1214 aa13.47□□□□□ -0.25
CLN3-226ENST00000567160 TRANK1O15050 2925 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 COL11A1P12107 1806 aaPredicted RBP13.46□□□□□ -0.25
CLN3-226ENST00000567160 PRR33A8MZF0 331 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 PI4K2BG5E9Z4 385 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 MPHOSPH10O00566 681 aaKnown RBP13.46□□□□□ -0.25
CLN3-226ENST00000567160 ASGR1P07306 291 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 C6orf222P0C671 652 aaPredicted RBP13.46□□□□□ -0.25
CLN3-226ENST00000567160 CYP2C18P33260 490 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 SHMT1P34896 483 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 ADD2P35612 726 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 DYNLL1P63167 89 aaKnown RBP13.46□□□□□ -0.25
CLN3-226ENST00000567160 LRRFIP1Q32MZ4 808 aaKnown RBP13.46□□□□□ -0.25
CLN3-226ENST00000567160 CCSAPQ6IQ19 270 aaPredicted RBP13.46□□□□□ -0.25
CLN3-226ENST00000567160 OTOP2Q7RTS6 562 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 FAM126BQ8IXS8 530 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 HLA-CQ95604 372 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 ATG4CQ96DT6 458 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 SH2D4AQ9H788 454 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 C11orf16Q9NQ32 467 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 MTCH2Q9Y6C9 303 aa13.46□□□□□ -0.25
CLN3-226ENST00000567160 NAV1Q8NEY1 1877 aa13.46□□□□□ -0.26
CLN3-226ENST00000567160 PARP14Q460N5 1801 aa13.46□□□□□ -0.26
CLN3-226ENST00000567160 A0A1W2PRG0 241 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 TCRBV5S4A2TA0A5A2 114 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 CDC45O75419 566 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 ZFYP08048 801 aaPredicted RBP13.45□□□□□ -0.26
CLN3-226ENST00000567160 CHMLP26374 656 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 GUCY1A2P33402 732 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 RABGGTBP53611 331 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 NMIQ13287 307 aaPredicted RBP13.45□□□□□ -0.26
CLN3-226ENST00000567160 TMEM132BQ14DG7 1078 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 SAMD1Q6SPF0 538 aaPredicted RBP13.45□□□□□ -0.26
CLN3-226ENST00000567160 RPUSD2Q8IZ73 545 aaKnown RBP13.45□□□□□ -0.26
CLN3-226ENST00000567160 FAM227BQ96M60 508 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 HIPK3Q9H422 1215 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 ARHGEF10LQ9HCE6 1279 aa13.45□□□□□ -0.26
CLN3-226ENST00000567160 ZHX1Q9UKY1 873 aaPredicted RBP13.45□□□□□ -0.26
CLN3-226ENST00000567160 A0A0D9SFI3 127 aa13.44□□□□□ -0.26
CLN3-226ENST00000567160 HIP1O00291 1037 aa13.44□□□□□ -0.26
CLN3-226ENST00000567160 ATP2A2P16615 1042 aaKnown RBP13.44□□□□□ -0.26
CLN3-226ENST00000567160 UBE3CQ15386 1083 aa13.44□□□□□ -0.26
CLN3-226ENST00000567160 TMEM67Q5HYA8 995 aa13.44□□□□□ -0.26
CLN3-226ENST00000567160 CWC27Q6UX04 472 aaKnown RBP13.44□□□□□ -0.26
CLN3-226ENST00000567160 RIOX2Q8IUF8 465 aa13.44□□□□□ -0.26
CLN3-226ENST00000567160 MIGA1Q8NAN2 632 aa13.44□□□□□ -0.26
CLN3-226ENST00000567160 APPBP2Q92624 585 aa13.44□□□□□ -0.26
CLN3-226ENST00000567160 MYH8P13535 1937 aa13.44□□□□□ -0.26
CLN3-226ENST00000567160 MYADML2A6NDP7 307 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 ZBBXA8MT70 800 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 M0R2C6 588 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 WDR46O15213 610 aaKnown RBP13.43□□□□□ -0.26
CLN3-226ENST00000567160 CD4P01730 458 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 POLR3DP05423 398 aaPredicted RBP13.43□□□□□ -0.26
CLN3-226ENST00000567160 STAT3P40763 770 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 GNASQ5JWF2 1037 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 ZMYM1Q5SVZ6 1142 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 TMED8Q6PL24 325 aaPredicted RBP13.43□□□□□ -0.26
CLN3-226ENST00000567160 TMEM179Q6ZVK1 233 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 OSBP2Q969R2 916 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 SEC62Q99442 399 aaKnown RBP13.43□□□□□ -0.26
CLN3-226ENST00000567160 SEZ6LQ9BYH1 1024 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 KCNH6Q9H252 994 aa13.43□□□□□ -0.26
CLN3-226ENST00000567160 MAGEB6P1A0A0J9YX57 407 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 PFKMP08237 780 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 MYOGP15173 224 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 PLCD1P51178 756 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 GJA9P57773 515 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 CSPP1Q1MSJ5 1256 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 CASC1Q6TDU7 716 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 MAMDC4Q6UXC1 1216 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 SPICE1Q8N0Z3 855 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 KHSRPQ92945 711 aaKnown RBP eCLIP13.42□□□□□ -0.26
CLN3-226ENST00000567160 DDX11Q96FC9 970 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 PUS7LQ9H0K6 701 aaKnown RBP13.42□□□□□ -0.26
CLN3-226ENST00000567160 UPF3AQ9H1J1 476 aaKnown RBP13.42□□□□□ -0.26
CLN3-226ENST00000567160 VCPKMTQ9H867 229 aa13.42□□□□□ -0.26
CLN3-226ENST00000567160 CABYRO75952 493 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 MBD4O95243 580 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 CA3P07451 260 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 CCL23P55773 120 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 GABPAQ06546 454 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 ACVR2BQ13705 512 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 TICAM2Q86XR7 235 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 LCORLQ8N3X6 602 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 RUFY2Q8WXA3 655 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 UIMC1Q96RL1 719 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 ABHD16BQ9H3Z7 469 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 ARMT1Q9H993 441 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 HELLSQ9NRZ9 838 aa13.41□□□□□ -0.26
CLN3-226ENST00000567160 ADAMTS5Q9UNA0 930 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms