RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TOX2Q96NM4 488 aa17.62■□□□□ 0.41
CLN3-222ENST00000566083 PRDM5Q9NQX1 630 aaPredicted RBP17.62■□□□□ 0.41
CLN3-222ENST00000566083 IL17RBQ9NRM6 502 aa17.62■□□□□ 0.41
CLN3-222ENST00000566083 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.62■□□□□ 0.41
CLN3-222ENST00000566083 ASB14A6NK59 587 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 TRIM6-TRIM34B2RNG4 842 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 POTEB2H3BUK9 544 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 ADAMTS4O75173 837 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 FGAP02671 866 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 CST5P28325 142 aaPredicted RBP17.61■□□□□ 0.41
CLN3-222ENST00000566083 NOVP48745 357 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 FAM109BQ6ICB4 259 aaPredicted RBP17.61■□□□□ 0.41
CLN3-222ENST00000566083 SMC5Q8IY18 1101 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 PDLIM7Q9NR12 457 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 TOMM22Q9NS69 142 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 RNF146Q9NTX7 359 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 TCP11L1Q9NUJ3 509 aa17.61■□□□□ 0.41
CLN3-222ENST00000566083 A0A1W2PQ45 241 aaPredicted RBP17.6■□□□□ 0.41
CLN3-222ENST00000566083 A0A1W2PQY0 241 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 CLTBP09497 229 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 ACLYP53396 1101 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 TLE2Q04725 743 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 VPS53Q5VIR6 699 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 ARMCX2Q7L311 632 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 KLHDC9Q8NEP7 349 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 GLT1D1Q96MS3 346 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 TTC14Q96N46 770 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 TRERF1Q96PN7 1200 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 RNF41Q9H4P4 317 aaPredicted RBP17.6■□□□□ 0.41
CLN3-222ENST00000566083 STARD7Q9NQZ5 370 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 HOMER2Q9NSB8 354 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 ELP1O95163 1332 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 MROH7Q68CQ1 1323 aa17.6■□□□□ 0.41
CLN3-222ENST00000566083 DCDC2CA8MYV0 355 aa17.59■□□□□ 0.41
CLN3-222ENST00000566083 HSPD1P10809 573 aaKnown RBP17.59■□□□□ 0.41
CLN3-222ENST00000566083 TOP1P11387 765 aaKnown RBP17.59■□□□□ 0.41
CLN3-222ENST00000566083 KCTD1Q719H9 257 aa17.59■□□□□ 0.41
CLN3-222ENST00000566083 ANKRD33Q7Z3H0 272 aa17.59■□□□□ 0.41
CLN3-222ENST00000566083 FAM133AQ8N9E0 248 aa17.59■□□□□ 0.41
CLN3-222ENST00000566083 LNPKQ9C0E8 428 aa17.59■□□□□ 0.41
CLN3-222ENST00000566083 PRR12Q9ULL5 1215 aa17.59■□□□□ 0.41
CLN3-222ENST00000566083 SYNRGQ9UMZ2 1314 aa17.59■□□□□ 0.41
CLN3-222ENST00000566083 A0A0D9SFI3 127 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 HIP1O00291 1037 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 ALAS1P13196 640 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 CCDC96Q2M329 555 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 CCDC144BQ3MJ40 725 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 MFSD6Q6ZSS7 791 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 CCDC144CPQ8IYA2 1237 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 RILPL2Q969X0 211 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 FAM227BQ96M60 508 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 OSBPL3Q9H4L5 887 aa17.58■□□□□ 0.41
CLN3-222ENST00000566083 A1CFQ9NQ94 594 aaKnown RBP17.58■□□□□ 0.41
CLN3-222ENST00000566083 ZNF536O15090 1300 aa17.58■□□□□ 0.4
CLN3-222ENST00000566083 CCDC171Q6TFL3 1326 aa17.58■□□□□ 0.4
CLN3-222ENST00000566083 LOC102724159A0A0B4J2E5 919 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 KIAA0355O15063 1070 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 NMT2O60551 498 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 ICAM1P05362 532 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 C6orf222P0C671 652 aaPredicted RBP17.57■□□□□ 0.4
CLN3-222ENST00000566083 GJA9P57773 515 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 PWP2Q15269 919 aaKnown RBP17.57■□□□□ 0.4
CLN3-222ENST00000566083 KCNA10Q16322 511 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 CCDC178Q5BJE1 867 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 BTNL9Q6UXG8 535 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 CHD1LQ86WJ1 897 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 BADQ92934 168 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 AGBL1Q96MI9 1066 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 SEZ6LQ9BYH1 1024 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 UPF3AQ9H1J1 476 aaKnown RBP17.57■□□□□ 0.4
CLN3-222ENST00000566083 STXBP5LQ9Y2K9 1186 aa17.57■□□□□ 0.4
CLN3-222ENST00000566083 RAG1P15918 1043 aa17.56■□□□□ 0.4
CLN3-222ENST00000566083 NKX3-2P78367 333 aa17.56■□□□□ 0.4
CLN3-222ENST00000566083 NMIQ13287 307 aaPredicted RBP17.56■□□□□ 0.4
CLN3-222ENST00000566083 RRP12Q5JTH9 1297 aaKnown RBP17.56■□□□□ 0.4
CLN3-222ENST00000566083 AKNAD1Q5T1N1 836 aa17.56■□□□□ 0.4
CLN3-222ENST00000566083 CCSAPQ6IQ19 270 aaPredicted RBP17.56■□□□□ 0.4
CLN3-222ENST00000566083 FGD4Q96M96 766 aa17.56■□□□□ 0.4
CLN3-222ENST00000566083 INCENPQ9NQS7 918 aa17.56■□□□□ 0.4
CLN3-222ENST00000566083 TMEM39AQ9NV64 488 aa17.56■□□□□ 0.4
CLN3-222ENST00000566083 MTMR10Q9NXD2 777 aa17.56■□□□□ 0.4
CLN3-222ENST00000566083 CCPG1Q9ULG6 757 aa17.56■□□□□ 0.4
CLN3-222ENST00000566083 TRIM43BA6NCK2 446 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 PQBP1O60828 265 aaKnown RBP17.55■□□□□ 0.4
CLN3-222ENST00000566083 SDSP20132 328 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 CNTN2Q02246 1040 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 GNASQ5JWF2 1037 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 CCDC174Q6PII3 467 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 SLC17A8Q8NDX2 589 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 ESR2Q92731 530 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 TRIM43Q96BQ3 446 aaPredicted RBP17.55■□□□□ 0.4
CLN3-222ENST00000566083 LENG1Q96BZ8 264 aaPredicted RBP17.55■□□□□ 0.4
CLN3-222ENST00000566083 ADD3Q9UEY8 706 aaKnown RBP17.55■□□□□ 0.4
CLN3-222ENST00000566083 Q9Y3F1 56 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 DNAH12Q6ZR08 3092 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 ZEB2O60315 1214 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 CABYRO75952 493 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 NUCB1Q02818 461 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 TNFAIP2Q03169 654 aa17.55■□□□□ 0.4
CLN3-222ENST00000566083 SYDE2Q5VT97 1194 aa17.55■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms