RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 NUP133Q8WUM0 1156 aa22.16■■□□□ 1.14
CLN3-218ENST00000565688 LENG1Q96BZ8 264 aaPredicted RBP22.16■■□□□ 1.14
CLN3-218ENST00000565688 HOMER2Q9NSB8 354 aa22.16■■□□□ 1.14
CLN3-218ENST00000565688 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.16■■□□□ 1.14
CLN3-218ENST00000565688 MOXD2PA6NHM9 499 aa22.15■■□□□ 1.14
CLN3-218ENST00000565688 FGRP09769 529 aa22.15■■□□□ 1.14
CLN3-218ENST00000565688 ACLYP53396 1101 aa22.15■■□□□ 1.14
CLN3-218ENST00000565688 MCMDC2Q4G0Z9 681 aa22.15■■□□□ 1.14
CLN3-218ENST00000565688 Q7L0L9 218 aa22.15■■□□□ 1.14
CLN3-218ENST00000565688 BADQ92934 168 aa22.15■■□□□ 1.14
CLN3-218ENST00000565688 INCENPQ9NQS7 918 aa22.15■■□□□ 1.14
CLN3-218ENST00000565688 NMT2O60551 498 aa22.14■■□□□ 1.13
CLN3-218ENST00000565688 CLTBP09497 229 aa22.14■■□□□ 1.13
CLN3-218ENST00000565688 NOVP48745 357 aa22.14■■□□□ 1.13
CLN3-218ENST00000565688 FAM109BQ6ICB4 259 aaPredicted RBP22.14■■□□□ 1.13
CLN3-218ENST00000565688 ARMCX2Q7L311 632 aa22.14■■□□□ 1.13
CLN3-218ENST00000565688 KLHDC9Q8NEP7 349 aa22.14■■□□□ 1.13
CLN3-218ENST00000565688 FGD4Q96M96 766 aa22.14■■□□□ 1.13
CLN3-218ENST00000565688 SPC25Q9HBM1 224 aa22.14■■□□□ 1.13
CLN3-218ENST00000565688 RNF146Q9NTX7 359 aa22.14■■□□□ 1.13
CLN3-218ENST00000565688 MTMR10Q9NXD2 777 aa22.14■■□□□ 1.13
CLN3-218ENST00000565688 ZNF536O15090 1300 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 ZMYM6O95789 1325 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 TRIM43BA6NCK2 446 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 POTEB2H3BUK9 544 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 FGAP02671 866 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 CST5P28325 142 aaPredicted RBP22.13■■□□□ 1.13
CLN3-218ENST00000565688 KCTD1Q719H9 257 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 SH3RF1Q7Z6J0 888 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 CCDC144CPQ8IYA2 1237 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 FAM133AQ8N9E0 248 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 PCSK9Q8NBP7 692 aaKnown RBP22.13■■□□□ 1.13
CLN3-218ENST00000565688 DCAF4Q8WV16 495 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 TRIM43Q96BQ3 446 aaPredicted RBP22.13■■□□□ 1.13
CLN3-218ENST00000565688 FAM227BQ96M60 508 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 AGBL1Q96MI9 1066 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 TOX2Q96NM4 488 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 RWDD1Q9H446 243 aaPredicted RBP22.13■■□□□ 1.13
CLN3-218ENST00000565688 STARD7Q9NQZ5 370 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 STXBP5LQ9Y2K9 1186 aa22.13■■□□□ 1.13
CLN3-218ENST00000565688 A0A0D9SFI3 127 aa22.12■■□□□ 1.13
CLN3-218ENST00000565688 PQBP1O60828 265 aaKnown RBP22.12■■□□□ 1.13
CLN3-218ENST00000565688 KCNA10Q16322 511 aa22.12■■□□□ 1.13
CLN3-218ENST00000565688 CCDC144BQ3MJ40 725 aa22.12■■□□□ 1.13
CLN3-218ENST00000565688 CCSAPQ6IQ19 270 aaPredicted RBP22.12■■□□□ 1.13
CLN3-218ENST00000565688 ANKRD33Q7Z3H0 272 aa22.12■■□□□ 1.13
CLN3-218ENST00000565688 SLC17A8Q8NDX2 589 aa22.12■■□□□ 1.13
CLN3-218ENST00000565688 TRERF1Q96PN7 1200 aa22.12■■□□□ 1.13
CLN3-218ENST00000565688 LNPKQ9C0E8 428 aa22.12■■□□□ 1.13
CLN3-218ENST00000565688 A1CFQ9NQ94 594 aaKnown RBP22.12■■□□□ 1.13
CLN3-218ENST00000565688 TOMM22Q9NS69 142 aa22.12■■□□□ 1.13
CLN3-218ENST00000565688 PRR12Q9ULL5 1215 aa22.12■■□□□ 1.13
CLN3-218ENST00000565688 A0A0C4DFX4 3053 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 ASB14A6NK59 587 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 DCDC2CA8MYV0 355 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 TRIM6-TRIM34B2RNG4 842 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 KIAA0355O15063 1070 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 HSPD1P10809 573 aaKnown RBP22.11■■□□□ 1.13
CLN3-218ENST00000565688 ALAS1P13196 640 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 CNTN2Q02246 1040 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 SHHQ15465 462 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 SMC5Q8IY18 1101 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 CHMP4CQ96CF2 233 aa22.11■■□□□ 1.13
CLN3-218ENST00000565688 UPF3AQ9H1J1 476 aaKnown RBP22.11■■□□□ 1.13
CLN3-218ENST00000565688 ELP1O95163 1332 aa22.1■■□□□ 1.13
CLN3-218ENST00000565688 C6orf222P0C671 652 aaPredicted RBP22.1■■□□□ 1.13
CLN3-218ENST00000565688 PCP11498 1178 aaKnown RBP22.1■■□□□ 1.13
CLN3-218ENST00000565688 MFAP1P55081 439 aaKnown RBP22.1■■□□□ 1.13
CLN3-218ENST00000565688 GJA9P57773 515 aa22.1■■□□□ 1.13
CLN3-218ENST00000565688 NMIQ13287 307 aaPredicted RBP22.1■■□□□ 1.13
CLN3-218ENST00000565688 CCDC96Q2M329 555 aa22.1■■□□□ 1.13
CLN3-218ENST00000565688 RRP12Q5JTH9 1297 aaKnown RBP22.1■■□□□ 1.13
CLN3-218ENST00000565688 CCDC174Q6PII3 467 aa22.1■■□□□ 1.13
CLN3-218ENST00000565688 GLT1D1Q96MS3 346 aa22.1■■□□□ 1.13
CLN3-218ENST00000565688 TCP11L1Q9NUJ3 509 aa22.1■■□□□ 1.13
CLN3-218ENST00000565688 TMEM39AQ9NV64 488 aa22.1■■□□□ 1.13
CLN3-218ENST00000565688 MROH7Q68CQ1 1323 aa22.09■■□□□ 1.13
CLN3-218ENST00000565688 CCDC171Q6TFL3 1326 aa22.09■■□□□ 1.13
CLN3-218ENST00000565688 TOP1P11387 765 aaKnown RBP22.09■■□□□ 1.13
CLN3-218ENST00000565688 RAG1P15918 1043 aa22.09■■□□□ 1.13
CLN3-218ENST00000565688 KATNBL1Q9H079 304 aa22.09■■□□□ 1.13
CLN3-218ENST00000565688 MTMR7Q9Y216 660 aa22.09■■□□□ 1.13
CLN3-218ENST00000565688 MYADML2A6NDP7 307 aa22.08■■□□□ 1.13
CLN3-218ENST00000565688 ADCY6O43306 1168 aa22.08■■□□□ 1.13
CLN3-218ENST00000565688 ICAM1P05362 532 aa22.08■■□□□ 1.13
CLN3-218ENST00000565688 GNASQ5JWF2 1037 aa22.08■■□□□ 1.13
CLN3-218ENST00000565688 C9orf50Q5SZB4 431 aa22.08■■□□□ 1.13
CLN3-218ENST00000565688 BTNL9Q6UXG8 535 aa22.08■■□□□ 1.13
CLN3-218ENST00000565688 ZNF589Q86UQ0 364 aaPredicted RBP22.08■■□□□ 1.13
CLN3-218ENST00000565688 RILPL2Q969X0 211 aa22.08■■□□□ 1.13
CLN3-218ENST00000565688 CCPG1Q9ULG6 757 aa22.08■■□□□ 1.13
CLN3-218ENST00000565688 MCM3APO60318 1980 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 SOWAHBA6NEL2 793 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 ASGR1P07306 291 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 SNAP25P60880 206 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 NKX3-2P78367 333 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 TNFAIP2Q03169 654 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 FAAP100Q0VG06 881 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 MFSD6Q6ZSS7 791 aa22.07■■□□□ 1.12
CLN3-218ENST00000565688 CHD1LQ86WJ1 897 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms