RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 UNC5AQ6ZN44 842 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 C7orf61Q8IZ16 206 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 ANKS4BQ8N8V4 417 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 OR6P1Q8NGX9 317 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 SEC16BQ96JE7 1060 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 SRRTQ9BXP5 876 aaKnown RBP6.72□□□□□ -1.33
VPS35-205ENST00000563984 C19orf44Q9H6X5 657 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 SP110Q9HB58 689 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 SMG5Q9UPR3 1016 aaKnown RBP6.72□□□□□ -1.33
VPS35-205ENST00000563984 SLC12A7Q9Y666 1083 aa6.72□□□□□ -1.33
VPS35-205ENST00000563984 ENDOUP21128 410 aaKnown RBP6.71□□□□□ -1.34
VPS35-205ENST00000563984 RPL10P27635 214 aaKnown RBP6.71□□□□□ -1.34
VPS35-205ENST00000563984 GIPRP48546 466 aa6.71□□□□□ -1.34
VPS35-205ENST00000563984 SNX17Q15036 470 aa6.71□□□□□ -1.34
VPS35-205ENST00000563984 RUFY4Q6ZNE9 571 aa6.71□□□□□ -1.34
VPS35-205ENST00000563984 CCDC144CPQ8IYA2 1237 aa6.71□□□□□ -1.34
VPS35-205ENST00000563984 LINC01599Q8WXQ3 324 aa6.71□□□□□ -1.34
VPS35-205ENST00000563984 FOXP3Q9BZS1 431 aa6.71□□□□□ -1.34
VPS35-205ENST00000563984 FAM86C2PA6NEL3 165 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 C9IYK1 514 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 SYPP08247 313 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 CCDC81Q6ZN84 652 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 WAPLQ7Z5K2 1190 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 C19orf47Q8N9M1 422 aaKnown RBP6.7□□□□□ -1.34
VPS35-205ENST00000563984 RNF32Q9H0A6 362 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 EPB41L4BQ9H329 900 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 ACBD3Q9H3P7 528 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 CCSER2Q9H7U1 834 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 DCP1AQ9NPI6 582 aaPredicted RBP6.7□□□□□ -1.34
VPS35-205ENST00000563984 GFOD1Q9NXC2 390 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 INPP5FQ9Y2H2 1132 aa6.7□□□□□ -1.34
VPS35-205ENST00000563984 TCAF2A6NFQ2 919 aa6.69□□□□□ -1.34
VPS35-205ENST00000563984 ETV2O00321 342 aaPredicted RBP6.69□□□□□ -1.34
VPS35-205ENST00000563984 NUAK1O60285 661 aa6.69□□□□□ -1.34
VPS35-205ENST00000563984 BMP8BP34820 402 aa6.69□□□□□ -1.34
VPS35-205ENST00000563984 KIR2DL1P43626 348 aaPredicted RBP6.69□□□□□ -1.34
VPS35-205ENST00000563984 KIR2DL2P43627 348 aaPredicted RBP6.69□□□□□ -1.34
VPS35-205ENST00000563984 ZYXQ15942 572 aaKnown RBP6.69□□□□□ -1.34
VPS35-205ENST00000563984 TIGD5Q53EQ6 642 aa6.69□□□□□ -1.34
VPS35-205ENST00000563984 EXOC8Q8IYI6 725 aa6.69□□□□□ -1.34
VPS35-205ENST00000563984 G6PC3Q9BUM1 346 aa6.69□□□□□ -1.34
VPS35-205ENST00000563984 EBF1Q9UH73 591 aa6.69□□□□□ -1.34
VPS35-205ENST00000563984 ZMYM5Q9UJ78 669 aa6.69□□□□□ -1.34
VPS35-205ENST00000563984 ZNF214Q9UL59 606 aaPredicted RBP6.69□□□□□ -1.34
VPS35-205ENST00000563984 TMEM82A0PJX8 343 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 SHOXO15266 292 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 GSNP06396 782 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 GLDCP23378 1020 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 NASPP49321 788 aaPredicted RBP6.68□□□□□ -1.34
VPS35-205ENST00000563984 GALK1P51570 392 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 LINC00310P59036 64 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 PPFIBP1Q86W92 1011 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 MAP6Q96JE9 813 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 DSCC1Q9BVC3 393 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 PHAXQ9H814 394 aaKnown RBP6.68□□□□□ -1.34
VPS35-205ENST00000563984 STRIP2Q9ULQ0 834 aa6.68□□□□□ -1.34
VPS35-205ENST00000563984 CLGNO14967 610 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 TCF3P15923 654 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 SYN1P17600 705 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 CD247P20963 164 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 ERCC5P28715 1186 aaPredicted RBP6.67□□□□□ -1.34
VPS35-205ENST00000563984 CTSKP43235 329 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 FAM193AP78312 1265 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 NFKB2Q00653 900 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 CNGB1Q14028 1251 aaPredicted RBP6.67□□□□□ -1.34
VPS35-205ENST00000563984 AXDND1Q5T1B0 1012 aaPredicted RBP6.67□□□□□ -1.34
VPS35-205ENST00000563984 TDRD10Q5VZ19 366 aaKnown RBP6.67□□□□□ -1.34
VPS35-205ENST00000563984 DCAF15Q66K64 600 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 CPLX3Q8WVH0 158 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 SHDQ96IW2 340 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 FCRL2Q96LA5 508 aaPredicted RBP6.67□□□□□ -1.34
VPS35-205ENST00000563984 SLC6A17Q9H1V8 727 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 GP6Q9HCN6 339 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 MINPP1Q9UNW1 487 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 LTBP3Q9NS15 1303 aa6.67□□□□□ -1.34
VPS35-205ENST00000563984 A0A1W2PQH9 124 aa6.66□□□□□ -1.34
VPS35-205ENST00000563984 MEIS1O00470 390 aa6.66□□□□□ -1.34
VPS35-205ENST00000563984 FKTNO75072 461 aa6.66□□□□□ -1.34
VPS35-205ENST00000563984 ZNF205O95201 554 aa6.66□□□□□ -1.34
VPS35-205ENST00000563984 TP53P04637 393 aaPredicted RBP6.66□□□□□ -1.34
VPS35-205ENST00000563984 VAV1P15498 845 aa6.66□□□□□ -1.34
VPS35-205ENST00000563984 CANXP27824 592 aaKnown RBP6.66□□□□□ -1.34
VPS35-205ENST00000563984 CASP7P55210 303 aa6.66□□□□□ -1.34
VPS35-205ENST00000563984 OS9Q13438 667 aaPredicted RBP6.66□□□□□ -1.34
VPS35-205ENST00000563984 NOL9Q5SY16 702 aaKnown RBP6.66□□□□□ -1.34
VPS35-205ENST00000563984 FAM43BQ6ZT52 329 aaPredicted RBP6.66□□□□□ -1.34
VPS35-205ENST00000563984 IRF2BPLQ9H1B7 796 aa6.66□□□□□ -1.34
VPS35-205ENST00000563984 TNFRSF10DQ9UBN6 386 aa6.66□□□□□ -1.34
VPS35-205ENST00000563984 GPR160Q9UJ42 338 aa6.66□□□□□ -1.34
VPS35-205ENST00000563984 YBX2Q9Y2T7 364 aaKnown RBP6.66□□□□□ -1.34
VPS35-205ENST00000563984 A0A087WZG4 1122 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 PLEKHD1A6NEE1 506 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 NRDCO43847 1150 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 PSPNO60542 156 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 ITGA4P13612 1032 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 BMP7P18075 431 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 ATF4P18848 351 aaPredicted RBP6.65□□□□□ -1.34
VPS35-205ENST00000563984 KRTAP1-1Q07627 177 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 TCEAL1Q15170 157 aa6.65□□□□□ -1.34
VPS35-205ENST00000563984 SLC14A2Q15849 920 aa6.65□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms