RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 CCNL1Q9UK58 526 aaPredicted RBP7.39□□□□□ -1.23
VPS35-204ENST00000563884 VAV3Q9UKW4 847 aa7.39□□□□□ -1.23
VPS35-204ENST00000563884 SPATA31E1Q6ZUB1 1445 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 NEFMP07197 916 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 C8AP07357 584 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 HSPA8P11142 646 aaKnown RBP7.38□□□□□ -1.23
VPS35-204ENST00000563884 TGFB2P61812 414 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 MAP2K1Q02750 393 aaPredicted RBP7.38□□□□□ -1.23
VPS35-204ENST00000563884 PRKCQQ04759 706 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 IFI16Q16666 785 aaKnown RBP7.38□□□□□ -1.23
VPS35-204ENST00000563884 NXPE4Q6UWF7 544 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 AEBP1Q8IUX7 1158 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 TOP6BLQ8N6T0 577 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 ISL2Q96A47 359 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 DUSP23Q9BVJ7 150 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 EMILIN2Q9BXX0 1053 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 C14orf93Q9H972 538 aaKnown RBP7.38□□□□□ -1.23
VPS35-204ENST00000563884 RC3H2Q9HBD1 1191 aaKnown RBP7.38□□□□□ -1.23
VPS35-204ENST00000563884 RNF181Q9P0P0 153 aa7.38□□□□□ -1.23
VPS35-204ENST00000563884 ANKRD36BQ8N2N9 1353 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 ACEP12821 1306 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 CEACAM5P06731 702 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 FUT4P22083 530 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 NME2P22392 152 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 CD96P40200 585 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 AOC3Q16853 763 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 ZC3H12AQ5D1E8 599 aaKnown RBP7.37□□□□□ -1.23
VPS35-204ENST00000563884 ALG1LQ6GMV1 187 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 C3orf58Q8NDZ4 430 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 PI4K2BQ8TCG2 481 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 GPBAR1Q8TDU6 330 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 HRASLS5Q96KN8 279 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 U3KQE9 123 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 C4AP0C0L4 1744 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 ADGRB1O14514 1584 aa7.37□□□□□ -1.23
VPS35-204ENST00000563884 USP47Q96K76 1375 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 TMEM265A0A087WTH1 108 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 GIPC1O14908 333 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 P4HBP07237 508 aaKnown RBP7.36□□□□□ -1.23
VPS35-204ENST00000563884 IL2RBP14784 551 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 ITIH2P19823 946 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 MAPK8P45983 427 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 OXCT1P55809 520 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 ERVK-24P63145 666 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 RNF214Q8ND24 703 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 ANKRD24Q8TF21 1146 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 SETDB2Q96T68 719 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 SRCIN1Q9C0H9 1055 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 MKNK2Q9HBH9 465 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 PICK1Q9NRD5 415 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 SCN4AP35499 1836 aa7.36□□□□□ -1.23
VPS35-204ENST00000563884 CASP8AP2Q9UKL3 1982 aa7.35□□□□□ -1.23
VPS35-204ENST00000563884 RNASE1P07998 156 aaKnown RBP7.35□□□□□ -1.23
VPS35-204ENST00000563884 ATG4DQ86TL0 474 aaPredicted RBP7.35□□□□□ -1.23
VPS35-204ENST00000563884 KCNH5Q8NCM2 988 aa7.35□□□□□ -1.23
VPS35-204ENST00000563884 SYTL4Q96C24 671 aaPredicted RBP7.35□□□□□ -1.23
VPS35-204ENST00000563884 OSBPL7Q9BZF2 842 aa7.35□□□□□ -1.23
VPS35-204ENST00000563884 MBNL3Q9NUK0 354 aaKnown RBP7.35□□□□□ -1.23
VPS35-204ENST00000563884 CUL9Q8IWT3 2517 aa7.34□□□□□ -1.23
VPS35-204ENST00000563884 DLEC1Q9Y238 1755 aa7.34□□□□□ -1.23
VPS35-204ENST00000563884 JAG1P78504 1218 aa7.34□□□□□ -1.23
VPS35-204ENST00000563884 RGL3Q3MIN7 710 aa7.34□□□□□ -1.23
VPS35-204ENST00000563884 TPTE2Q6XPS3 522 aa7.34□□□□□ -1.23
VPS35-204ENST00000563884 DNAJC14Q6Y2X3 702 aaPredicted RBP7.34□□□□□ -1.23
VPS35-204ENST00000563884 ADAMTS6Q9UKP5 1117 aa7.34□□□□□ -1.23
VPS35-204ENST00000563884 PLAGL2Q9UPG8 496 aa7.34□□□□□ -1.23
VPS35-204ENST00000563884 SAMM50Q9Y512 469 aa7.34□□□□□ -1.23
VPS35-204ENST00000563884 CSADQ9Y600 493 aa7.34□□□□□ -1.23
VPS35-204ENST00000563884 ITGB4P16144 1822 aa7.34□□□□□ -1.24
VPS35-204ENST00000563884 GLTPD2A6NH11 291 aa7.33□□□□□ -1.24
VPS35-204ENST00000563884 ZNF252P-AS1Q0IIN9 211 aa7.33□□□□□ -1.24
VPS35-204ENST00000563884 PPM1JQ5JR12 505 aa7.33□□□□□ -1.24
VPS35-204ENST00000563884 ZNF648Q5T619 568 aaPredicted RBP7.33□□□□□ -1.24
VPS35-204ENST00000563884 ANGEL2Q5VTE6 544 aaKnown RBP7.33□□□□□ -1.24
VPS35-204ENST00000563884 MPRIPQ6WCQ1 1025 aa7.33□□□□□ -1.24
VPS35-204ENST00000563884 FAM168AQ92567 244 aa7.33□□□□□ -1.24
VPS35-204ENST00000563884 FRMD6Q96NE9 622 aa7.33□□□□□ -1.24
VPS35-204ENST00000563884 NECAB3Q96P71 396 aaPredicted RBP7.33□□□□□ -1.24
VPS35-204ENST00000563884 TRPM7Q96QT4 1865 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 ANKRD33BA6NCL7 494 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 DCDC2CA8MYV0 355 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 GSTT1P30711 240 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 ATP2B2Q01814 1243 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 LRRN4CLQ8ND94 238 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 GRIN3AQ8TCU5 1115 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 GTF2IRD1Q9UHL9 959 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.32□□□□□ -1.24
VPS35-204ENST00000563884 KDM6AO15550 1401 aaPredicted RBP7.32□□□□□ -1.24
VPS35-204ENST00000563884 ARID1BQ8NFD5 2236 aaPredicted RBP7.32□□□□□ -1.24
VPS35-204ENST00000563884 LTBP1Q14766 1721 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 NFAT5O94916 1531 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 ADAMTS7Q9UKP4 1686 aa7.32□□□□□ -1.24
VPS35-204ENST00000563884 LDHBP07195 334 aaKnown RBP7.31□□□□□ -1.24
VPS35-204ENST00000563884 CDC37L1Q7L3B6 337 aa7.31□□□□□ -1.24
VPS35-204ENST00000563884 HEXIM2Q96MH2 286 aaKnown RBP7.31□□□□□ -1.24
VPS35-204ENST00000563884 CEP44Q9C0F1 390 aa7.31□□□□□ -1.24
VPS35-204ENST00000563884 PPM1HQ9ULR3 514 aa7.31□□□□□ -1.24
VPS35-204ENST00000563884 SNX11Q9Y5W9 270 aa7.31□□□□□ -1.24
VPS35-204ENST00000563884 NSD2O96028 1365 aa7.31□□□□□ -1.24
VPS35-204ENST00000563884 A0A0G2JLW4 131 aa7.3□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms