RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 NTSR2O95665 410 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 CAGE1Q8TC20 777 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 JAKMIP2Q96AA8 810 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 ACSBG1Q96GR2 724 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 RSPH14Q9UHP6 348 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 CICQ96RK0 1608 aaPredicted RBP14.81□□□□□ -0.04
CLN3-210ENST00000563874 ARAP2Q8WZ64 1704 aa14.81□□□□□ -0.04
CLN3-210ENST00000563874 ZNF804BA4D1E1 1349 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 MYBL2P10244 700 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 LONP1P36776 959 aaKnown RBP14.8□□□□□ -0.04
CLN3-210ENST00000563874 ATP6V1AP38606 617 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 TRAPPC10P48553 1259 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 MRPS25P82663 173 aaKnown RBP14.8□□□□□ -0.04
CLN3-210ENST00000563874 TMED8Q6PL24 325 aaPredicted RBP14.8□□□□□ -0.04
CLN3-210ENST00000563874 ZNF507Q8TCN5 953 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 LRRC15Q8TF66 581 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 MAGEC2Q9UBF1 373 aaPredicted RBP14.8□□□□□ -0.04
CLN3-210ENST00000563874 CAMTA2O94983 1202 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 UBA7P41226 1012 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 INF2Q27J81 1249 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 CAVIN4Q5BKX8 364 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 DTHD1Q6ZMT9 781 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.8□□□□□ -0.04
CLN3-210ENST00000563874 DCP1AQ9NPI6 582 aaPredicted RBP14.8□□□□□ -0.04
CLN3-210ENST00000563874 JADE2Q9NQC1 790 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 CCDC87Q9NVE4 849 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 CAPN11Q9UMQ6 739 aa14.8□□□□□ -0.04
CLN3-210ENST00000563874 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.8□□□□□ -0.04
CLN3-210ENST00000563874 PDE2AO00408 941 aaPredicted RBP14.79□□□□□ -0.04
CLN3-210ENST00000563874 SYF2O95926 243 aaKnown RBP14.79□□□□□ -0.04
CLN3-210ENST00000563874 MECOMQ03112 1051 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 CSGALNACT2Q8N6G5 542 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 SMCR8Q8TEV9 937 aaPredicted RBP14.79□□□□□ -0.04
CLN3-210ENST00000563874 FAM84BQ96KN1 310 aaPredicted RBP14.79□□□□□ -0.04
CLN3-210ENST00000563874 PYM1Q9BRP8 204 aaKnown RBP14.79□□□□□ -0.04
CLN3-210ENST00000563874 TUBGCP2Q9BSJ2 902 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 TSPYL1Q9H0U9 437 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 ITGB4P16144 1822 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 EXOC5O00471 708 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 PSMA7O14818 248 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 DRC1Q96MC2 740 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 ACBD3Q9H3P7 528 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 PLCH1Q4KWH8 1693 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 PDS5AQ29RF7 1337 aaKnown RBP14.79□□□□□ -0.04
CLN3-210ENST00000563874 CCDC194A0A1B0GVG4 234 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 KLRC4O43908 158 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 FGRP09769 529 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 PRDX5P30044 214 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 TBC1D8BQ0IIM8 1120 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 ARL6IP4Q66PJ3 421 aaKnown RBP14.79□□□□□ -0.04
CLN3-210ENST00000563874 RCSD1Q6JBY9 416 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 LRRC31Q6UY01 552 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 KRT26Q7Z3Y9 468 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 ANKRD18AQ8IVF6 992 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 NHEJ1Q9H9Q4 299 aaPredicted RBP14.79□□□□□ -0.04
CLN3-210ENST00000563874 TFCP2L1Q9NZI6 479 aa14.79□□□□□ -0.04
CLN3-210ENST00000563874 RASSF10A6NK89 507 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 KRT86O43790 486 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 EEF1GP26641 437 aaKnown RBP14.78□□□□□ -0.04
CLN3-210ENST00000563874 SLC20A2Q08357 652 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 C2orf54Q08AI8 447 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 MSL3Q8N5Y2 521 aaKnown RBP14.78□□□□□ -0.04
CLN3-210ENST00000563874 HPS3Q969F9 1004 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 NSUN4Q96CB9 384 aaKnown RBP14.78□□□□□ -0.04
CLN3-210ENST00000563874 MED4Q9NPJ6 270 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 HPCAL4Q9UM19 191 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 IVLP07476 585 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 PLEKP08567 350 aaPredicted RBP14.78□□□□□ -0.04
CLN3-210ENST00000563874 IDEP14735 1019 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 ERCC3P19447 782 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 KRT83P78385 493 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 STIM1Q13586 685 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 PARP10Q53GL7 1025 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 CCDC178Q5BJE1 867 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 PAPD7Q5XG87 772 aaKnown RBP14.78□□□□□ -0.04
CLN3-210ENST00000563874 TTI2Q6NXR4 508 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 BICDL1Q6ZP65 573 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 DISP2A7MBM2 1401 aa14.78□□□□□ -0.04
CLN3-210ENST00000563874 A0A1W2PQC6 194 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 IPO7O95373 1038 aaKnown RBP14.77□□□□□ -0.04
CLN3-210ENST00000563874 TUBBP07437 444 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 USP17L8P0C7I0 530 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 ERFEQ4G0M1 354 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 HEATR3Q7Z4Q2 680 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 GOLGA6L1Q8N7Z2 621 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 PSMB7Q99436 277 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 DUSP9Q99956 384 aaKnown RBP14.77□□□□□ -0.04
CLN3-210ENST00000563874 CPVLQ9H3G5 476 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 KAT14Q9H8E8 782 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 EXOC1Q9NV70 894 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 PCDHA4Q9UN74 947 aa14.77□□□□□ -0.04
CLN3-210ENST00000563874 CALML3P27482 149 aa14.77□□□□□ -0.05
CLN3-210ENST00000563874 GGCXP38435 758 aa14.77□□□□□ -0.05
CLN3-210ENST00000563874 DNM2P50570 870 aa14.77□□□□□ -0.05
CLN3-210ENST00000563874 IRX3P78415 501 aaPredicted RBP14.77□□□□□ -0.05
CLN3-210ENST00000563874 THAP9Q9H5L6 903 aa14.77□□□□□ -0.05
CLN3-210ENST00000563874 ZNHIT6Q9NWK9 470 aaKnown RBP14.77□□□□□ -0.05
CLN3-210ENST00000563874 MCM9Q9NXL9 1143 aa14.77□□□□□ -0.05
CLN3-210ENST00000563874 SRGNP10124 158 aa14.77□□□□□ -0.05
CLN3-210ENST00000563874 FCER1AP12319 257 aa14.77□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms