RNA–Protein interactions for RNA: ENST00000563396.1

SMPD3-204, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 3

Gene SMPD3, Length 608 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-204ENST00000563396 ACAD9Q9H845 621 aa16.57■□□□□ 0.24
SMPD3-204ENST00000563396 TRIOBPQ9H2D6 2365 aa16.57■□□□□ 0.24
SMPD3-204ENST00000563396 ZNF865P0CJ78 1059 aaPredicted RBP16.56■□□□□ 0.24
SMPD3-204ENST00000563396 ZNF543Q08ER8 600 aa16.56■□□□□ 0.24
SMPD3-204ENST00000563396 IKQ13123 557 aaPredicted RBP16.56■□□□□ 0.24
SMPD3-204ENST00000563396 CCDC96Q2M329 555 aa16.56■□□□□ 0.24
SMPD3-204ENST00000563396 CHRDL2Q6WN34 429 aa16.56■□□□□ 0.24
SMPD3-204ENST00000563396 DGKHQ86XP1 1220 aa16.56■□□□□ 0.24
SMPD3-204ENST00000563396 RNF146Q9NTX7 359 aa16.56■□□□□ 0.24
SMPD3-204ENST00000563396 CTNNA3Q9UI47 895 aa16.56■□□□□ 0.24
SMPD3-204ENST00000563396 ISY1Q9ULR0 285 aaKnown RBP16.56■□□□□ 0.24
SMPD3-204ENST00000563396 MYH6P13533 1939 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 ICAM1P05362 532 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 AKR1A1P14550 325 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 CHMLP26374 656 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 LRRC26Q2I0M4 334 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 PRAMEF19Q5SWL8 479 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 IQCA1Q86XH1 822 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 C7orf61Q8IZ16 206 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 ANKRD35Q8N283 1001 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 FAM133AQ8N9E0 248 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 ANKS1AQ92625 1134 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 DDX11Q96FC9 970 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 AGBL1Q96MI9 1066 aa16.55■□□□□ 0.24
SMPD3-204ENST00000563396 A1CFQ9NQ94 594 aaKnown RBP16.55■□□□□ 0.24
SMPD3-204ENST00000563396 A0A1W2PPC1 479 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 KDM4AO75164 1064 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 SNAI1O95863 264 aaPredicted RBP16.54■□□□□ 0.24
SMPD3-204ENST00000563396 TAL1P17542 331 aaPredicted RBP16.54■□□□□ 0.24
SMPD3-204ENST00000563396 SNX17Q15036 470 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 CCDC178Q5BJE1 867 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 SYDE2Q5VT97 1194 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 TTBK2Q6IQ55 1244 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 ARRDC4Q8NCT1 418 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 RUFY2Q8WXA3 655 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 CNNM2Q9H8M5 875 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 HOMER2Q9NSB8 354 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 CNPY2Q9Y2B0 182 aa16.54■□□□□ 0.24
SMPD3-204ENST00000563396 ASTN1O14525 1302 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 FRMPD2Q68DX3 1309 aaPredicted RBP16.53■□□□□ 0.24
SMPD3-204ENST00000563396 WDR19Q8NEZ3 1342 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 LAMA3Q16787 3333 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 B4E1Z4 1266 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 SGSM2O43147 1006 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 RARBP10826 455 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 FXR1P51114 621 aaKnown RBP eCLIP16.53■□□□□ 0.24
SMPD3-204ENST00000563396 LRRC41Q15345 812 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 GPATCH4Q5T3I0 446 aaKnown RBP16.53■□□□□ 0.24
SMPD3-204ENST00000563396 ANO1Q5XXA6 986 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 ZSCAN10Q96SZ4 725 aaPredicted RBP16.53■□□□□ 0.24
SMPD3-204ENST00000563396 KRT23Q9C075 422 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 KATNBL1Q9H079 304 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 XPNPEP3Q9NQH7 507 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.53■□□□□ 0.24
SMPD3-204ENST00000563396 RBM27Q9P2N5 1060 aaKnown RBP16.53■□□□□ 0.24
SMPD3-204ENST00000563396 MTMR7Q9Y216 660 aa16.53■□□□□ 0.24
SMPD3-204ENST00000563396 TNKSO95271 1327 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 KBTBD13C9JR72 458 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 ADAMTS4O75173 837 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 ALAS1P13196 640 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 SLC16A2P36021 539 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 GJC2Q5T442 439 aaPredicted RBP16.52■□□□□ 0.24
SMPD3-204ENST00000563396 CCDC174Q6PII3 467 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 ARMCX2Q7L311 632 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 ENAHQ8N8S7 591 aaPredicted RBP16.52■□□□□ 0.24
SMPD3-204ENST00000563396 PNMA1Q8ND90 353 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 CHMP4CQ96CF2 233 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 TRERF1Q96PN7 1200 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 GDF15Q99988 308 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 ZKSCAN3Q9BRR0 538 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 ABHD16BQ9H3Z7 469 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 PNMA2Q9UL42 364 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 CCPG1Q9ULG6 757 aa16.52■□□□□ 0.24
SMPD3-204ENST00000563396 SYNRGQ9UMZ2 1314 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 POTEB2H3BUK9 544 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 SLC4A3P48751 1232 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 SNAP25P60880 206 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 CNTN2Q02246 1040 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 MUM1L1Q5H9M0 696 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 C1orf53Q5VUE5 145 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 CCDC144CPQ8IYA2 1237 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 SENP6Q9GZR1 1112 aaPredicted RBP16.51■□□□□ 0.23
SMPD3-204ENST00000563396 GPCPD1Q9NPB8 672 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 CYP39A1Q9NYL5 469 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 ZSWIM5Q9P217 1185 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 PHF24Q9UPV7 400 aa16.51■□□□□ 0.23
SMPD3-204ENST00000563396 SZT2Q5T011 3432 aa16.5■□□□□ 0.23
SMPD3-204ENST00000563396 SOWAHBA6NEL2 793 aa16.5■□□□□ 0.23
SMPD3-204ENST00000563396 CYP21A2P08686 494 aa16.5■□□□□ 0.23
SMPD3-204ENST00000563396 BMP8BP34820 402 aa16.5■□□□□ 0.23
SMPD3-204ENST00000563396 PTH1RQ03431 593 aa16.5■□□□□ 0.23
SMPD3-204ENST00000563396 ACVR2BQ13705 512 aa16.5■□□□□ 0.23
SMPD3-204ENST00000563396 ASPRV1Q53RT3 343 aa16.5■□□□□ 0.23
SMPD3-204ENST00000563396 CENPQQ7L2Z9 268 aaPredicted RBP16.5■□□□□ 0.23
SMPD3-204ENST00000563396 LENG1Q96BZ8 264 aaPredicted RBP16.5■□□□□ 0.23
SMPD3-204ENST00000563396 ZHX1Q9UKY1 873 aaPredicted RBP16.5■□□□□ 0.23
SMPD3-204ENST00000563396 FAM184BQ9ULE4 1060 aa16.5■□□□□ 0.23
SMPD3-204ENST00000563396 ZMYND8Q9ULU4 1186 aaPredicted RBP16.5■□□□□ 0.23
SMPD3-204ENST00000563396 U3KPZ7 1027 aaPredicted RBP16.5■□□□□ 0.23
SMPD3-204ENST00000563396 LOC102724159A0A0B4J2E5 919 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms