RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 SLC38A10Q9HBR0 1119 aa19.2■□□□□ 0.66
VPS4A-202ENST00000562754 WDR33Q9C0J8 1336 aaKnown RBP19.2■□□□□ 0.66
VPS4A-202ENST00000562754 PNMA6FA0A0J9YX94 578 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 ZBTB5O15062 677 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 DEXIO95424 95 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 CYP2C8P10632 490 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 OSBPP22059 807 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 HERVK_113P62684 666 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 PFKFB3Q16875 520 aaPredicted RBP19.19■□□□□ 0.66
VPS4A-202ENST00000562754 LBX2Q6XYB7 198 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 GPKOWQ92917 476 aaPredicted RBP eCLIP19.19■□□□□ 0.66
VPS4A-202ENST00000562754 SHISA4Q96DD7 197 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 RBM27Q9P2N5 1060 aaKnown RBP19.19■□□□□ 0.66
VPS4A-202ENST00000562754 PNMA3Q9UL41 463 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 ZNF536O15090 1300 aa19.19■□□□□ 0.66
VPS4A-202ENST00000562754 PEX10O60683 326 aa19.18■□□□□ 0.66
VPS4A-202ENST00000562754 SCG2P13521 617 aa19.18■□□□□ 0.66
VPS4A-202ENST00000562754 TM4SF4P48230 202 aa19.18■□□□□ 0.66
VPS4A-202ENST00000562754 INHBEP58166 350 aa19.18■□□□□ 0.66
VPS4A-202ENST00000562754 AKAP17AQ02040 695 aaKnown RBP19.18■□□□□ 0.66
VPS4A-202ENST00000562754 WWC2Q6AWC2 1192 aa19.18■□□□□ 0.66
VPS4A-202ENST00000562754 CCDC174Q6PII3 467 aa19.18■□□□□ 0.66
VPS4A-202ENST00000562754 ZCCHC17Q9NP64 241 aaKnown RBP19.18■□□□□ 0.66
VPS4A-202ENST00000562754 HOXC10Q9NYD6 342 aa19.18■□□□□ 0.66
VPS4A-202ENST00000562754 SEC63Q9UGP8 760 aaKnown RBP19.18■□□□□ 0.66
VPS4A-202ENST00000562754 ADGRA2Q96PE1 1338 aa19.18■□□□□ 0.66
VPS4A-202ENST00000562754 CNMDO75829 334 aa19.17■□□□□ 0.66
VPS4A-202ENST00000562754 FOSBP53539 338 aa19.17■□□□□ 0.66
VPS4A-202ENST00000562754 TYW1BQ6NUM6 668 aa19.17■□□□□ 0.66
VPS4A-202ENST00000562754 PARK7Q99497 189 aaKnown RBP19.17■□□□□ 0.66
VPS4A-202ENST00000562754 ALG1Q9BT22 464 aa19.17■□□□□ 0.66
VPS4A-202ENST00000562754 GJB4Q9NTQ9 266 aa19.17■□□□□ 0.66
VPS4A-202ENST00000562754 BTBD7Q9P203 1132 aa19.17■□□□□ 0.66
VPS4A-202ENST00000562754 ZNF214Q9UL59 606 aaPredicted RBP19.17■□□□□ 0.66
VPS4A-202ENST00000562754 STXBP3O00186 592 aa19.16■□□□□ 0.66
VPS4A-202ENST00000562754 ZBED4O75132 1171 aa19.16■□□□□ 0.66
VPS4A-202ENST00000562754 FDX1P10109 184 aa19.16■□□□□ 0.66
VPS4A-202ENST00000562754 TMEM132BQ14DG7 1078 aa19.16■□□□□ 0.66
VPS4A-202ENST00000562754 HEATR3Q7Z4Q2 680 aa19.16■□□□□ 0.66
VPS4A-202ENST00000562754 FBXO11Q86XK2 927 aa19.16■□□□□ 0.66
VPS4A-202ENST00000562754 FAM184AQ8NB25 1140 aa19.16■□□□□ 0.66
VPS4A-202ENST00000562754 COA7Q96BR5 231 aa19.16■□□□□ 0.66
VPS4A-202ENST00000562754 RAVER2Q9HCJ3 691 aaKnown RBP19.16■□□□□ 0.66
VPS4A-202ENST00000562754 TXNRD2Q9NNW7 524 aa19.16■□□□□ 0.66
VPS4A-202ENST00000562754 RBBP6Q7Z6E9 1792 aaKnown RBP19.16■□□□□ 0.66
VPS4A-202ENST00000562754 ICAM1P05362 532 aa19.15■□□□□ 0.66
VPS4A-202ENST00000562754 TAF1CQ15572 869 aaPredicted RBP19.15■□□□□ 0.66
VPS4A-202ENST00000562754 CPXCR1Q8N123 301 aa19.15■□□□□ 0.66
VPS4A-202ENST00000562754 MB21D1Q8N884 522 aa19.15■□□□□ 0.66
VPS4A-202ENST00000562754 WASF1Q92558 559 aa19.15■□□□□ 0.66
VPS4A-202ENST00000562754 AGBL1Q96MI9 1066 aa19.15■□□□□ 0.66
VPS4A-202ENST00000562754 PAGR1Q9BTK6 254 aa19.15■□□□□ 0.66
VPS4A-202ENST00000562754 AMNQ9BXJ7 453 aa19.15■□□□□ 0.66
VPS4A-202ENST00000562754 VPS54Q9P1Q0 977 aa19.15■□□□□ 0.66
VPS4A-202ENST00000562754 RBPJLQ9UBG7 517 aa19.15■□□□□ 0.66
VPS4A-202ENST00000562754 hCG_1984214I3L0E3 225 aa19.14■□□□□ 0.65
VPS4A-202ENST00000562754 ATP2A1O14983 1001 aa19.14■□□□□ 0.65
VPS4A-202ENST00000562754 MAP2K2P36507 400 aa19.14■□□□□ 0.65
VPS4A-202ENST00000562754 OAZ1P54368 228 aa19.14■□□□□ 0.65
VPS4A-202ENST00000562754 USH1GQ495M9 461 aa19.14■□□□□ 0.65
VPS4A-202ENST00000562754 OTUD7BQ6GQQ9 843 aa19.14■□□□□ 0.65
VPS4A-202ENST00000562754 ZNF713Q8N859 430 aaPredicted RBP19.14■□□□□ 0.65
VPS4A-202ENST00000562754 SMCR8Q8TEV9 937 aaPredicted RBP19.14■□□□□ 0.65
VPS4A-202ENST00000562754 GTF3C2Q8WUA4 911 aaPredicted RBP19.14■□□□□ 0.65
VPS4A-202ENST00000562754 BARHL2Q9NY43 387 aa19.14■□□□□ 0.65
VPS4A-202ENST00000562754 DAXXQ9UER7 740 aaPredicted RBP19.14■□□□□ 0.65
VPS4A-202ENST00000562754 CCPG1Q9ULG6 757 aa19.14■□□□□ 0.65
VPS4A-202ENST00000562754 CTDP1Q9Y5B0 961 aaPredicted RBP19.14■□□□□ 0.65
VPS4A-202ENST00000562754 DDIT3P35638 169 aa19.13■□□□□ 0.65
VPS4A-202ENST00000562754 REM2Q8IYK8 340 aaPredicted RBP19.13■□□□□ 0.65
VPS4A-202ENST00000562754 RABGAP1Q9Y3P9 1069 aa19.13■□□□□ 0.65
VPS4A-202ENST00000562754 KIF3AQ9Y496 699 aa19.13■□□□□ 0.65
VPS4A-202ENST00000562754 PCDHA1Q9Y5I3 950 aa19.13■□□□□ 0.65
VPS4A-202ENST00000562754 GCLCP48506 637 aaPredicted RBP19.12■□□□□ 0.65
VPS4A-202ENST00000562754 NAPAP54920 295 aa19.12■□□□□ 0.65
VPS4A-202ENST00000562754 GUCY1B3Q02153 619 aa19.12■□□□□ 0.65
VPS4A-202ENST00000562754 SNRNP48Q6IEG0 339 aaKnown RBP19.12■□□□□ 0.65
VPS4A-202ENST00000562754 PPP1R18Q6NYC8 613 aa19.12■□□□□ 0.65
VPS4A-202ENST00000562754 C8orf76Q96K31 380 aa19.12■□□□□ 0.65
VPS4A-202ENST00000562754 TEX13BQ9BXU2 312 aa19.12■□□□□ 0.65
VPS4A-202ENST00000562754 CWC22Q9HCG8 908 aaKnown RBP19.12■□□□□ 0.65
VPS4A-202ENST00000562754 SH3GLB2Q9NR46 395 aa19.12■□□□□ 0.65
VPS4A-202ENST00000562754 MORF4L1Q9UBU8 362 aa19.12■□□□□ 0.65
VPS4A-202ENST00000562754 RIPK3Q9Y572 518 aa19.12■□□□□ 0.65
VPS4A-202ENST00000562754 ABCB11O95342 1321 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 OPLAHO14841 1288 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 ALAS1P13196 640 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 SYT1P21579 422 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 STAT3P40763 770 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 CRHR2Q13324 411 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 PLS1Q14651 629 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 NPY5RQ15761 445 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 KRT40Q6A162 431 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 ANKRD13CQ8N6S4 541 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 SPATC1LQ9H0A9 340 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 KCNJ14Q9UNX9 436 aa19.11■□□□□ 0.65
VPS4A-202ENST00000562754 ESYT2A0FGR8 921 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 ADAMTS3O15072 1205 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 CA12O43570 354 aa19.1■□□□□ 0.65
VPS4A-202ENST00000562754 ERVK-9P63128 1117 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms