RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, human

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-222	ENST00000560131	DIAPH3	Q9NSV4	1193 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	TYW1	Q9NV66	732 aa	Known RBP	6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	GMIP	Q9P107	970 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	KIF3A	Q9Y496	699 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	ASXL2	Q76L83	1435 aa		6.24	□□□□□ -1.41
TPM1-222	ENST00000560131	MRC2	Q9UBG0	1479 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	CCDC163	A0A0D9SF12	145 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	UPK3BL1	B0FP48	263 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	UPK3BL2	E5RIL1	263 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	CTIF	O43310	598 aa	Known RBP	6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	CYP11A1	P05108	521 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	PDGFRB	P09619	1106 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	FAM153B	P0C7A2	387 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	ARAF	P10398	606 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	NME1	P15531	152 aa	Known RBP	6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	ADH7	P40394	386 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	ARL4D	P49703	201 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	INPP5A	Q14642	412 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	TMEM67	Q5HYA8	995 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	WIPI1	Q5MNZ9	446 aa	Predicted RBP	6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	GDF6	Q6KF10	455 aa	Predicted RBP	6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	VHLL	Q6RSH7	139 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	CHSY3	Q70JA7	882 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	FTSJ3	Q8IY81	847 aa	Known RBP	6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	TCP11L2	Q8N4U5	519 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	ARHGAP45	Q92619	1136 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	ATG4C	Q96DT6	458 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	ACSBG1	Q96GR2	724 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	SLC26A8	Q96RN1	970 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	KRTAP4-9	Q9BYQ8	210 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	ZC3H12C	Q9C0D7	883 aa	Known RBP	6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	EPN3	Q9H201	632 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	PHAX	Q9H814	394 aa	Known RBP	6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	CHPF2	Q9P2E5	772 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	REV1	Q9UBZ9	1251 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	NAGPA	Q9UK23	515 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	CD2AP	Q9Y5K6	639 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	CORIN	Q9Y5Q5	1042 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	PTCH1	Q13635	1447 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	LTBP3	Q9NS15	1303 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	CDC42BPG	Q6DT37	1551 aa		6.23	□□□□□ -1.41
TPM1-222	ENST00000560131	ANKRD26	Q9UPS8	1709 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	ABCA9	Q8IUA7	1624 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	ANKRD36B	Q8N2N9	1353 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131		A0A0U1RQG5	324 aa	Predicted RBP	6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	IQCA1L	A6NCM1	817 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	NEURL1B	A8MQ27	555 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	TNFRSF10C	O14798	259 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	APBA3	O96018	575 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	ACR	P10323	421 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	TRIM27	P14373	513 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	PLCG1	P19174	1290 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	MCM2	P49736	904 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	PDE4B	Q07343	736 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	POU4F3	Q15319	338 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	TMEM201	Q5SNT2	666 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	CDCP2	Q5VXM1	449 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	CAVIN1	Q6NZI2	390 aa	Known RBP	6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	LRFN4	Q6PJG9	635 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	LRRC47	Q8N1G4	583 aa	Known RBP	6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	WNT8B	Q93098	351 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	TRIM11	Q96F44	468 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	PLPPR2	Q96GM1	343 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	CORO1B	Q9BR76	489 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	TSPYL1	Q9H0U9	437 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	CNNM2	Q9H8M5	875 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	TMEM51	Q9NW97	253 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	OGFR	Q9NZT2	677 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	KLF15	Q9UIH9	416 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	ZHX1	Q9UKY1	873 aa	Predicted RBP	6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	PPME1	Q9Y570	386 aa		6.22	□□□□□ -1.41
TPM1-222	ENST00000560131	SYCP2	Q9BX26	1530 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	EPB41L2	O43491	1005 aa	Known RBP	6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	RGS9	O75916	674 aa	Predicted RBP	6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	S100B	P04271	92 aa	Predicted RBP	6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	ADH6	P28332	368 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	PIP4K2B	P78356	416 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	C19orf57	Q0VDD7	668 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	NOLC1	Q14978	699 aa	Known RBP eCLIP	6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	ZYX	Q15942	572 aa	Known RBP	6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	OVOS1	Q6IE37	1185 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	PSAPL1	Q6NUJ1	521 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	FAM117B	Q6P1L5	589 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	CYFIP1	Q7L576	1253 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	NLRC3	Q7RTR2	1065 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	GPT2	Q8TD30	523 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	SLC7A3	Q8WY07	619 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	NINJ1	Q92982	152 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	INTS4	Q96HW7	963 aa	Known RBP	6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	CFAP53	Q96M91	514 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	MDFI	Q99750	246 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	TSPY26P	Q9H489	355 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	CCDC86	Q9H6F5	360 aa	Known RBP	6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	OSGEP	Q9NPF4	335 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	USP25	Q9UHP3	1055 aa		6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	6.21	□□□□□ -1.42
TPM1-222	ENST00000560131	ARAP3	Q8WWN8	1544 aa		6.2	□□□□□ -1.42
TPM1-222	ENST00000560131	CCDC66	A2RUB6	948 aa		6.2	□□□□□ -1.42
TPM1-222	ENST00000560131	SPDYE3	A6NKU9	549 aa		6.2	□□□□□ -1.42

Retrieved 100 of 20,778 RNA–protein pairs in 24 ms