RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 PLIN4Q96Q06 1357 aa20.34■□□□□ 0.85
SNX1-208ENST00000559844 PHIPQ8WWQ0 1821 aa20.33■□□□□ 0.85
SNX1-208ENST00000559844 PTPREP23469 700 aa20.33■□□□□ 0.84
SNX1-208ENST00000559844 NOL9Q5SY16 702 aaKnown RBP20.33■□□□□ 0.84
SNX1-208ENST00000559844 LDLRAD1Q5T700 205 aa20.33■□□□□ 0.84
SNX1-208ENST00000559844 CLEC10AQ8IUN9 316 aa20.33■□□□□ 0.84
SNX1-208ENST00000559844 ZNF579Q8NAF0 562 aaKnown RBP20.33■□□□□ 0.84
SNX1-208ENST00000559844 TMEM47Q9BQJ4 181 aa20.33■□□□□ 0.84
SNX1-208ENST00000559844 KIAA1468Q9P260 1216 aa20.33■□□□□ 0.84
SNX1-208ENST00000559844 SNCAIPQ9Y6H5 919 aa20.33■□□□□ 0.84
SNX1-208ENST00000559844 hCG_1642624A0A1W2PR95 340 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 TRIM75PA6NK02 468 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 CALML3P27482 149 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 CEP57L1Q8IYX8 460 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 FAM13BQ9NYF5 915 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 STX8Q9UNK0 236 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 TMEM88BA6NKF7 163 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 NLRP5P59047 1200 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 CCDC84Q86UT8 332 aaPredicted RBP20.32■□□□□ 0.84
SNX1-208ENST00000559844 FAM177A1Q8N128 213 aaPredicted RBP20.32■□□□□ 0.84
SNX1-208ENST00000559844 CEP95Q96GE4 821 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 ELP3Q9H9T3 547 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 FBXO2Q9UK22 296 aaPredicted RBP20.32■□□□□ 0.84
SNX1-208ENST00000559844 ZKSCAN5Q9Y2L8 839 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 PCDHB6Q9Y5E3 794 aa20.32■□□□□ 0.84
SNX1-208ENST00000559844 GOLGA6L19H0YKK7 550 aa20.31■□□□□ 0.84
SNX1-208ENST00000559844 HUNKP57058 714 aa20.31■□□□□ 0.84
SNX1-208ENST00000559844 ELOA2Q8IYF1 753 aaPredicted RBP20.31■□□□□ 0.84
SNX1-208ENST00000559844 TNFRSF25Q93038 417 aa20.31■□□□□ 0.84
SNX1-208ENST00000559844 CLIC6Q96NY7 704 aa20.31■□□□□ 0.84
SNX1-208ENST00000559844 GINM1Q9NU53 330 aa20.31■□□□□ 0.84
SNX1-208ENST00000559844 MAD2L2Q9UI95 211 aa20.31■□□□□ 0.84
SNX1-208ENST00000559844 SRPRBQ9Y5M8 271 aaKnown RBP20.31■□□□□ 0.84
SNX1-208ENST00000559844 TOP1P11387 765 aaKnown RBP20.3■□□□□ 0.84
SNX1-208ENST00000559844 PTPRAP18433 802 aa20.3■□□□□ 0.84
SNX1-208ENST00000559844 SAPCD2Q86UD0 394 aa20.3■□□□□ 0.84
SNX1-208ENST00000559844 KANSL2Q9H9L4 492 aa20.3■□□□□ 0.84
SNX1-208ENST00000559844 ABT1Q9ULW3 272 aaKnown RBP20.3■□□□□ 0.84
SNX1-208ENST00000559844 IGKV6D-41A0A0C4DH26 115 aa20.3■□□□□ 0.84
SNX1-208ENST00000559844 PALM3A6NDB9 673 aaPredicted RBP20.3■□□□□ 0.84
SNX1-208ENST00000559844 TPM3P06753 285 aa20.3■□□□□ 0.84
SNX1-208ENST00000559844 NOVP48745 357 aa20.3■□□□□ 0.84
SNX1-208ENST00000559844 ICA1Q05084 483 aa20.3■□□□□ 0.84
SNX1-208ENST00000559844 C11orf57Q6ZUT1 292 aaPredicted RBP20.3■□□□□ 0.84
SNX1-208ENST00000559844 KCNH3Q9ULD8 1083 aa20.3■□□□□ 0.84
SNX1-208ENST00000559844 UNCXA6NJT0 531 aa20.29■□□□□ 0.84
SNX1-208ENST00000559844 USP17L5A8MUK1 530 aa20.29■□□□□ 0.84
SNX1-208ENST00000559844 GOLGA6L6A8MZA4 724 aa20.29■□□□□ 0.84
SNX1-208ENST00000559844 TRAPPC10P48553 1259 aa20.29■□□□□ 0.84
SNX1-208ENST00000559844 ATP2B2Q01814 1243 aa20.29■□□□□ 0.84
SNX1-208ENST00000559844 IQCB1Q15051 598 aa20.29■□□□□ 0.84
SNX1-208ENST00000559844 NPY5RQ15761 445 aa20.29■□□□□ 0.84
SNX1-208ENST00000559844 MTMR4Q9NYA4 1195 aa20.29■□□□□ 0.84
SNX1-208ENST00000559844 HOOK1Q9UJC3 728 aaKnown RBP20.29■□□□□ 0.84
SNX1-208ENST00000559844 AP5Z1O43299 807 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 STAG2Q8N3U4 1231 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 CNKSR2Q8WXI2 1034 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 SLC10A4Q96EP9 437 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 TLL2Q9Y6L7 1015 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 ZHX2Q9Y6X8 837 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 PTPRFP10586 1907 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 BECN2A8MW95 431 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 ATP2B1P20020 1258 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 SMARCA1P28370 1054 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 APLP1P51693 650 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 NLRP12P59046 1061 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 GALNT17Q6IS24 598 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 CCDC148Q8NFR7 591 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 OTUD5Q96G74 571 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 BPIFA3Q9BQP9 254 aa20.28■□□□□ 0.84
SNX1-208ENST00000559844 TTLL1O95922 423 aa20.27■□□□□ 0.84
SNX1-208ENST00000559844 PARP1P09874 1014 aaKnown RBP20.27■□□□□ 0.84
SNX1-208ENST00000559844 EEF2P13639 858 aaKnown RBP20.27■□□□□ 0.84
SNX1-208ENST00000559844 KRBA2Q6ZNG9 492 aa20.27■□□□□ 0.84
SNX1-208ENST00000559844 ERO1BQ86YB8 467 aa20.27■□□□□ 0.84
SNX1-208ENST00000559844 FERMT2Q96AC1 680 aa20.27■□□□□ 0.84
SNX1-208ENST00000559844 SPZ1Q9BXG8 430 aa20.27■□□□□ 0.84
SNX1-208ENST00000559844 CLIP2Q9UDT6 1046 aa20.27■□□□□ 0.84
SNX1-208ENST00000559844 SPDYE5A6NIY4 337 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 TTC38Q5R3I4 469 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.26■□□□□ 0.83
SNX1-208ENST00000559844 SIAH1Q8IUQ4 282 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 OPTNQ96CV9 577 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 AS3MTQ9HBK9 375 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 ARHGEF10LQ9HCE6 1279 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 EARS2Q5JPH6 523 aaKnown RBP20.26■□□□□ 0.83
SNX1-208ENST00000559844 PPP4R3BQ5MIZ7 849 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 SARM1Q6SZW1 724 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 BLIDQ8IZY5 108 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 CNNM3Q8NE01 707 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 ACER1Q8TDN7 264 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 PIBF1Q8WXW3 757 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 NYAP2Q9P242 653 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 TUBE1Q9UJT0 475 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 PCDHA4Q9UN74 947 aa20.26■□□□□ 0.83
SNX1-208ENST00000559844 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.25■□□□□ 0.83
SNX1-208ENST00000559844 FAM205CA6NFA0 338 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 KLRF2D3W0D1 207 aa20.25■□□□□ 0.83
SNX1-208ENST00000559844 ZNF500O60304 480 aaPredicted RBP20.25■□□□□ 0.83
SNX1-208ENST00000559844 ECE1P42892 770 aa20.25■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms