RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ASPRV1Q53RT3 343 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 IFIT1BQ5T764 474 aaKnown RBP10.13□□□□□ -0.79
USP3-208ENST00000558285 TMTC2Q8N394 836 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 ARRDC4Q8NCT1 418 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 USP6NLQ92738 828 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 NUP88Q99567 741 aaPredicted RBP10.13□□□□□ -0.79
USP3-208ENST00000558285 TMEM47Q9BQJ4 181 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 MTA3Q9BTC8 594 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 UNC93B1Q9H1C4 597 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 PAK6Q9NQU5 681 aaPredicted RBP10.13□□□□□ -0.79
USP3-208ENST00000558285 FBXO28Q9NVF7 368 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 POTEFA5A3E0 1075 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 SMIM22K7EJ46 135 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 FOXP2O15409 715 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 DHX16O60231 1041 aaKnown RBP10.13□□□□□ -0.79
USP3-208ENST00000558285 PARP1P09874 1014 aaKnown RBP10.13□□□□□ -0.79
USP3-208ENST00000558285 EN2P19622 333 aaPredicted RBP10.13□□□□□ -0.79
USP3-208ENST00000558285 CNGA1P29973 690 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 NOVP48745 357 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 MTFR1Q15390 333 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 KIAA1755Q5JYT7 1200 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 NECAB2Q7Z6G3 386 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 TBC1D10CQ8IV04 446 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 TRIB2Q92519 343 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 IL17RBQ9NRM6 502 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 ADD3Q9UEY8 706 aaKnown RBP10.13□□□□□ -0.79
USP3-208ENST00000558285 ZNF214Q9UL59 606 aaPredicted RBP10.13□□□□□ -0.79
USP3-208ENST00000558285 MTMR7Q9Y216 660 aa10.13□□□□□ -0.79
USP3-208ENST00000558285 B4E1Z4 1266 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 REC8O95072 547 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 CAP1Q01518 475 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 KRT32Q14532 448 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 SYDE2Q5VT97 1194 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 KCTD1Q719H9 257 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 ZNF467Q7Z7K2 595 aaPredicted RBP10.12□□□□□ -0.79
USP3-208ENST00000558285 PNMA1Q8ND90 353 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 ANKS1AQ92625 1134 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 SPC25Q9HBM1 224 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 ANO2Q9NQ90 1003 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 CCPG1Q9ULG6 757 aa10.12□□□□□ -0.79
USP3-208ENST00000558285 GREB1LQ9C091 1923 aaPredicted RBP10.11□□□□□ -0.79
USP3-208ENST00000558285 RBBP6Q7Z6E9 1792 aaKnown RBP10.11□□□□□ -0.79
USP3-208ENST00000558285 LOC102724159A0A0B4J2E5 919 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 ASB14A6NK59 587 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 ICAM1P05362 532 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 PWP2Q15269 919 aaKnown RBP10.11□□□□□ -0.79
USP3-208ENST00000558285 MAP3K21Q5TCX8 1036 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 PRPF38BQ5VTL8 546 aaKnown RBP10.11□□□□□ -0.79
USP3-208ENST00000558285 BTNL9Q6UXG8 535 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 SYNE3Q6ZMZ3 975 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.11□□□□□ -0.79
USP3-208ENST00000558285 CATIPQ7Z7H3 387 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 MAP4K1Q92918 833 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 NBPF3Q9H094 633 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 RAVER2Q9HCJ3 691 aaKnown RBP10.11□□□□□ -0.79
USP3-208ENST00000558285 PRR12Q9ULL5 1215 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 TNKSO95271 1327 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 NEDD4P46934 1319 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 SYNGAP1Q96PV0 1343 aa10.11□□□□□ -0.79
USP3-208ENST00000558285 KBTBD13C9JR72 458 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 IFIT3O14879 490 aaKnown RBP10.1□□□□□ -0.79
USP3-208ENST00000558285 NMT2O60551 498 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 HMGB1P09429 215 aaKnown RBP10.1□□□□□ -0.79
USP3-208ENST00000558285 CALM1P0DP23 149 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 CALM2P0DP24 149 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 CALM3P0DP25 149 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 RARBP10826 455 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 PDHBP11177 359 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 ALAS1P13196 640 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 KIF5BP33176 963 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 MCM5P33992 734 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 CACNB2Q08289 660 aaPredicted RBP10.1□□□□□ -0.79
USP3-208ENST00000558285 ZNF543Q08ER8 600 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 WTAPQ15007 396 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 MCF2L2Q86YR7 1114 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 DPF3Q92784 378 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 MAML3Q96JK9 1138 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 ESYT1Q9BSJ8 1104 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 CRISPLD2Q9H0B8 497 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 GPCPD1Q9NPB8 672 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 RNF146Q9NTX7 359 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 ZSWIM5Q9P217 1185 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 DDX20Q9UHI6 824 aaKnown RBP10.1□□□□□ -0.79
USP3-208ENST00000558285 ZNF236Q9UL36 1845 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 WDR19Q8NEZ3 1342 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 SEPT4O43236 478 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 GNAQP50148 359 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 CCDC174Q6PII3 467 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 REPS2Q8NFH8 660 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 TMEM87BQ96K49 555 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 TRERF1Q96PN7 1200 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 LZTS2Q9BRK4 669 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 TINF2Q9BSI4 451 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 SCUBE2Q9NQ36 999 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 RBM8AQ9Y5S9 174 aaKnown RBP10.1□□□□□ -0.79
USP3-208ENST00000558285 A0A0G2JMZ2 1700 aa10.1□□□□□ -0.79
USP3-208ENST00000558285 MYH4Q9Y623 1939 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 AKR1A1P14550 325 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 TMEM67Q5HYA8 995 aa10.09□□□□□ -0.79
USP3-208ENST00000558285 NFXL1Q6ZNB6 911 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 112.8 ms