RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 CRACR2AQ9BSW2 395 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 KAT14Q9H8E8 782 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 LRWD1Q9UFC0 647 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 HPCAL4Q9UM19 191 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 FCER1AP12319 257 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 XBP1P17861 261 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 STIM1Q13586 685 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 SEC23AQ15436 765 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 CCDC96Q2M329 555 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 TYW1BQ6NUM6 668 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 STAG2Q8N3U4 1231 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 CCDC155Q8N6L0 562 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 ZNF579Q8NAF0 562 aaKnown RBP13.84□□□□□ -0.19
LDLR-205ENST00000557933 SELENOOQ9BVL4 669 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 FAM107BQ9H098 131 aa13.84□□□□□ -0.19
LDLR-205ENST00000557933 MAGEB6P1A0A0J9YX57 407 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 PDE8AO60658 829 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 UQCRFS1P1P0C7P4 283 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 INF2Q27J81 1249 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 PDXDC2PQ6P474 469 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 ACSBG1Q96GR2 724 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 NAA15Q9BXJ9 866 aaKnown RBP13.83□□□□□ -0.2
LDLR-205ENST00000557933 CAPN6Q9Y6Q1 641 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 EPHB6O15197 1021 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 USP14P54578 494 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 FUT2Q10981 343 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 WHAMMP3Q1A5X7 153 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 MEX3CQ5U5Q3 659 aaKnown RBP13.83□□□□□ -0.2
LDLR-205ENST00000557933 NFRKBQ6P4R8 1299 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 OR8K1Q8NGG5 319 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 HNRNPLLQ8WVV9 542 aaKnown RBP13.83□□□□□ -0.2
LDLR-205ENST00000557933 ECM29Q5VYK3 1845 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 BRWD3Q6RI45 1802 aa13.83□□□□□ -0.2
LDLR-205ENST00000557933 BCORQ6W2J9 1755 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 BUB1O43683 1085 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 MYO1BO43795 1136 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 MOCS3O95396 460 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 NAP1L1P55209 391 aaKnown RBP13.82□□□□□ -0.2
LDLR-205ENST00000557933 APBA1Q02410 837 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 TROAPQ12815 778 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 TSR1Q2NL82 804 aaKnown RBP13.82□□□□□ -0.2
LDLR-205ENST00000557933 TRAPPC11Q7Z392 1133 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 ANKRD20A12PQ8NF67 263 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 FAM71BQ8TC56 605 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 MS4A14Q96JA4 679 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 LRRC1Q9BTT6 524 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 TFCP2L1Q9NZI6 479 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 CHRNDQ07001 517 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 FBXW10Q5XX13 1052 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 MB21D1Q8N884 522 aa13.82□□□□□ -0.2
LDLR-205ENST00000557933 IPO4Q8TEX9 1081 aaKnown RBP13.82□□□□□ -0.2
LDLR-205ENST00000557933 RNF26Q9BY78 433 aaPredicted RBP13.82□□□□□ -0.2
LDLR-205ENST00000557933 AGPSO00116 658 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 FGFR2P21802 821 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 TBC1D8BQ0IIM8 1120 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 TTC31Q49AM3 519 aaPredicted RBP13.81□□□□□ -0.2
LDLR-205ENST00000557933 CSGALNACT2Q8N6G5 542 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 NHEJ1Q9H9Q4 299 aaPredicted RBP13.81□□□□□ -0.2
LDLR-205ENST00000557933 BRMS1Q9HCU9 246 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 ZNF263O14978 683 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 RGL2O15211 777 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 ZEB2O60315 1214 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 NOP2P46087 812 aaKnown RBP13.81□□□□□ -0.2
LDLR-205ENST00000557933 ARID5AQ03989 594 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 C3orf67Q6ZVT6 689 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 VAT1LQ9HCJ6 419 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 LIMA1Q9UHB6 759 aaKnown RBP13.81□□□□□ -0.2
LDLR-205ENST00000557933 PACSIN2Q9UNF0 486 aaPredicted RBP13.81□□□□□ -0.2
LDLR-205ENST00000557933 MYH2Q9UKX2 1941 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 TAF1LQ8IZX4 1826 aa13.81□□□□□ -0.2
LDLR-205ENST00000557933 MTIF2P46199 727 aaKnown RBP13.8□□□□□ -0.2
LDLR-205ENST00000557933 ATP2C1P98194 919 aaPredicted RBP13.8□□□□□ -0.2
LDLR-205ENST00000557933 IQCA1Q86XH1 822 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 GPATCH11Q8N954 259 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 CTCFLQ8NI51 663 aaPredicted RBP13.8□□□□□ -0.2
LDLR-205ENST00000557933 ZNF384Q8TF68 577 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 GJA10Q969M2 543 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 DYNLL2Q96FJ2 89 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 RWDD2AQ9UIY3 292 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 BACH1O14867 736 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 GTF2A1P52655 376 aaPredicted RBP13.8□□□□□ -0.2
LDLR-205ENST00000557933 STK4Q13043 487 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 TRADDQ15628 312 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 NAALADL2Q58DX5 795 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 HEATR3Q7Z4Q2 680 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 C2CD5Q86YS7 1000 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 SLC44A5Q8NCS7 719 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 ARL8AQ96BM9 186 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 TUBGCP2Q9BSJ2 902 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 CENPHQ9H3R5 247 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 SLC39A2Q9NP94 309 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 GOLGA6CA6NDK9 693 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 GOLGA6BA6NDN3 693 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 PRPF6O94906 941 aaKnown RBP13.8□□□□□ -0.2
LDLR-205ENST00000557933 KRT14P02533 472 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 GOLGA6DP0CG33 693 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 PDCLQ13371 301 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 ALX1Q15699 326 aa13.8□□□□□ -0.2
LDLR-205ENST00000557933 ZNF658Q5TYW1 1059 aaPredicted RBP13.8□□□□□ -0.2
LDLR-205ENST00000557933 ZNF772Q68DY9 489 aaPredicted RBP13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms