RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 PLXNA1Q9UIW2 1896 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 ZMYM6O95789 1325 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 CCDC171Q6TFL3 1326 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 SYNRGQ9UMZ2 1314 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 A0A1W2PQ45 241 aaPredicted RBP17.29■□□□□ 0.36
SHMT2-235ENST00000557740 A0A1W2PQY0 241 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 POTEB2H3BUK9 544 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 PLA2G6O60733 806 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 FGAP02671 866 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 TKFCQ3LXA3 575 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 C1orf53Q5VUE5 145 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 RCSD1Q6JBY9 416 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 B4GALNT3Q6L9W6 998 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 CCDC174Q6PII3 467 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 ARMCX2Q7L311 632 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 SMC5Q8IY18 1101 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 DEFB123Q8N688 67 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 AGBL1Q96MI9 1066 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 TACC3Q9Y6A5 838 aa17.29■□□□□ 0.36
SHMT2-235ENST00000557740 ADAMTS4O75173 837 aa17.28■□□□□ 0.36
SHMT2-235ENST00000557740 HSPD1P10809 573 aaKnown RBP17.28■□□□□ 0.36
SHMT2-235ENST00000557740 ALAS1P13196 640 aa17.28■□□□□ 0.36
SHMT2-235ENST00000557740 MFAP1P55081 439 aaKnown RBP17.28■□□□□ 0.36
SHMT2-235ENST00000557740 TLE2Q04725 743 aa17.28■□□□□ 0.36
SHMT2-235ENST00000557740 ACVR2BQ13705 512 aa17.28■□□□□ 0.36
SHMT2-235ENST00000557740 RASGRP2Q7LDG7 609 aa17.28■□□□□ 0.36
SHMT2-235ENST00000557740 ZNF589Q86UQ0 364 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-235ENST00000557740 DCAF4Q8WV16 495 aa17.28■□□□□ 0.36
SHMT2-235ENST00000557740 FGD4Q96M96 766 aa17.28■□□□□ 0.36
SHMT2-235ENST00000557740 TSEN34Q9BSV6 310 aaKnown RBP17.28■□□□□ 0.36
SHMT2-235ENST00000557740 ABHD16BQ9H3Z7 469 aa17.28■□□□□ 0.36
SHMT2-235ENST00000557740 ZNF536O15090 1300 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 DUSP11O75319 330 aaKnown RBP17.27■□□□□ 0.36
SHMT2-235ENST00000557740 FGRP09769 529 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 HAND2P61296 217 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 CNTN2Q02246 1040 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 CHD1LQ86WJ1 897 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 CCDC144CPQ8IYA2 1237 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 NUP133Q8WUM0 1156 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 TRERF1Q96PN7 1200 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 SPC25Q9HBM1 224 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 A1CFQ9NQ94 594 aaKnown RBP17.27■□□□□ 0.36
SHMT2-235ENST00000557740 STARD7Q9NQZ5 370 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 CCPG1Q9ULG6 757 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 PRR12Q9ULL5 1215 aa17.27■□□□□ 0.36
SHMT2-235ENST00000557740 MOXD2PA6NHM9 499 aa17.26■□□□□ 0.35
SHMT2-235ENST00000557740 PQBP1O60828 265 aaKnown RBP17.26■□□□□ 0.35
SHMT2-235ENST00000557740 CLTBP09497 229 aa17.26■□□□□ 0.35
SHMT2-235ENST00000557740 C6orf222P0C671 652 aaPredicted RBP17.26■□□□□ 0.35
SHMT2-235ENST00000557740 TOP1P11387 765 aaKnown RBP17.26■□□□□ 0.35
SHMT2-235ENST00000557740 ACLYP53396 1101 aa17.26■□□□□ 0.35
SHMT2-235ENST00000557740 SNAP25P60880 206 aa17.26■□□□□ 0.35
SHMT2-235ENST00000557740 CCDC144BQ3MJ40 725 aa17.26■□□□□ 0.35
SHMT2-235ENST00000557740 Q7L0L9 218 aa17.26■□□□□ 0.35
SHMT2-235ENST00000557740 BADQ92934 168 aa17.26■□□□□ 0.35
SHMT2-235ENST00000557740 TRIM43BA6NCK2 446 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 ASB14A6NK59 587 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 PCP11498 1178 aaKnown RBP17.25■□□□□ 0.35
SHMT2-235ENST00000557740 CST5P28325 142 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-235ENST00000557740 NOVP48745 357 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 NUCB1Q02818 461 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 KCNA10Q16322 511 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 MFSD6Q6ZSS7 791 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 SH3RF1Q7Z6J0 888 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 PLEKHM2Q8IWE5 1019 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 FAM133AQ8N9E0 248 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 PCSK9Q8NBP7 692 aaKnown RBP17.25■□□□□ 0.35
SHMT2-235ENST00000557740 EXOC6Q8TAG9 804 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 TRIM43Q96BQ3 446 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-235ENST00000557740 RNF41Q9H4P4 317 aaPredicted RBP17.25■□□□□ 0.35
SHMT2-235ENST00000557740 DIAPH3Q9NSV4 1193 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 TCP11L1Q9NUJ3 509 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 DNAH12Q6ZR08 3092 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 SMCHD1A6NHR9 2005 aa17.25■□□□□ 0.35
SHMT2-235ENST00000557740 MYADML2A6NDP7 307 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 ICAM1P05362 532 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 SDSP20132 328 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 AKNAD1Q5T1N1 836 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 SYDE2Q5VT97 1194 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 NSMFQ6X4W1 530 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 NOL8Q76FK4 1167 aaKnown RBP17.24■□□□□ 0.35
SHMT2-235ENST00000557740 TBC1D10CQ8IV04 446 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 KLHDC9Q8NEP7 349 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 TMEM47Q9BQJ4 181 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 UPF3AQ9H1J1 476 aaKnown RBP17.24■□□□□ 0.35
SHMT2-235ENST00000557740 LTBP2Q14767 1821 aa17.24■□□□□ 0.35
SHMT2-235ENST00000557740 FRMPD2Q68DX3 1309 aaPredicted RBP17.23■□□□□ 0.35
SHMT2-235ENST00000557740 DCDC2CA8MYV0 355 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 ADCY6O43306 1168 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 IGHDP01880 384 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 SLC16A2P36021 539 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 MUM1L1Q5H9M0 696 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 TTBK2Q6IQ55 1244 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 VTI1AQ96AJ9 217 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 GLT1D1Q96MS3 346 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 RANBP17Q9H2T7 1088 aaKnown RBP17.23■□□□□ 0.35
SHMT2-235ENST00000557740 OSBPL3Q9H4L5 887 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 GPCPD1Q9NPB8 672 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 CYP39A1Q9NYL5 469 aa17.23■□□□□ 0.35
SHMT2-235ENST00000557740 SOWAHBA6NEL2 793 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms